Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H11
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           31   1.2  
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179...    30   2.1  
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186...    30   2.1  
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386           30   2.1  
06_01_0430 - 3058832-3058952,3059590-3059795,3060103-3060294,306...    30   2.8  
02_04_0289 + 21615745-21616155,21617417-21617870,21618162-216182...    29   4.9  
06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330     28   8.5  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +2

Query: 224 PGAGAPPHELPHPAPNGAPPDNHHNXXXXXXXXXXXXAGGSGDMGT 361
           P A  PP   P PAP   PP +HH+             G     GT
Sbjct: 273 PAAPPPPAGPPPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGT 318


>12_01_0239 -
           1793612-1793716,1793808-1793826,1794424-1794599,
           1794701-1794747,1795760-1796291
          Length = 292

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 227 GAGAPPHELPHPAPNGAPP 283
           G GAPP   P+ AP GAPP
Sbjct: 76  GYGAPPSSQPYGAPYGAPP 94


>11_01_0242 -
           1862106-1862210,1862302-1862320,1863082-1863257,
           1863359-1863405,1864443-1865022
          Length = 308

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 227 GAGAPPHELPHPAPNGAPP 283
           G GAPP   P+ AP GAPP
Sbjct: 92  GYGAPPSSQPYGAPYGAPP 110


>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
          Length = 1066

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -3

Query: 254 GAREAERPLPAC--SPPLADMLVLRPEQFI-PLPPSVFN 147
           G      P+P+C  S PL + LVL+      P+PPS+FN
Sbjct: 206 GNNSLSGPIPSCIGSLPLLERLVLQCNNLTGPVPPSIFN 244


>06_01_0430 -
           3058832-3058952,3059590-3059795,3060103-3060294,
           3061241-3061287,3062233-3062455
          Length = 262

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
 Frame = +2

Query: 224 PGAGAPPHEL---PHPAPNGAPPDNHHNXXXXXXXXXXXXAGGSGDMGTHNVSSPAIR 388
           P  G P H +   P P P  A P +HH             A  S  MG   V  PA R
Sbjct: 29  PRVGQPSHGVANAPPPEPPRAAPYHHHGPPTVSAAPHPVPASSSTSMGIQVVIKPAYR 86


>02_04_0289 +
           21615745-21616155,21617417-21617870,21618162-21618217,
           21618307-21618437,21618565-21618727
          Length = 404

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 230 AGAPPHELPHPAPNGAPPDNHHN 298
           A AP H  PHP  +G  P  HH+
Sbjct: 19  AAAPHHHHPHPHAHGMHPHAHHH 41


>06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330
          Length = 426

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +2

Query: 233 GAPPHELPHPAPNGAPPDNHHNXXXXXXXXXXXXAGGSGDMGTHNVSS 376
           GAPPHE   P        +HH+              G G  G++N+ S
Sbjct: 335 GAPPHESSAPQIGAMLHHHHHHQQDHMQVSSLVHINGGGGGGSNNILS 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,826,637
Number of Sequences: 37544
Number of extensions: 271233
Number of successful extensions: 1170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)