Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H10
         (949 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257...   109   3e-24
02_05_0759 + 31545473-31546204                                         66   3e-11
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852...    30   3.1  
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499     29   7.1  
03_02_0358 + 7784067-7784128,7784239-7785040,7785513-7785617,778...    29   7.1  

>06_03_0928 +
           26024589-26024645,26024900-26024956,26025464-26025707,
           26026126-26026238,26026675-26026761,26026843-26026962
          Length = 225

 Score =  109 bits (262), Expect = 3e-24
 Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 2/183 (1%)
 Frame = +1

Query: 181 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIKTDA 354
           R  ++ VA  + + +K P  ++G  G YASALF  A+K   LD VE E+    ++ K   
Sbjct: 23  RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82

Query: 355 KLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMM 534
              +FI + ++ +  +V A+  +  +   S  T N L +LA+NGRL  ++ +   F  + 
Sbjct: 83  LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142

Query: 535 AAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIGDK 714
            AH+GEV   V T  PL + + + L+  L+  L  N+T+ +  K+D S++GG+V+  G K
Sbjct: 143 MAHKGEVKVLVRTVIPLPEKEEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQK 202

Query: 715 YVD 723
             D
Sbjct: 203 VFD 205


>02_05_0759 + 31545473-31546204
          Length = 243

 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 2/153 (1%)
 Frame = +1

Query: 256 YASALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKI 435
           YA+AL   AS+   L+    +L + ++    +A + EF  NPT+ R  K   +  +A   
Sbjct: 64  YATALSEVASENGTLEATVSDLEKLEKIFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSS 122

Query: 436 SLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEA 615
            L     N L ++ +NGR G +  ++  F+    A       EV T   + Q + Q+L  
Sbjct: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFE---NAFNSLTGTEVATVTSVVQLESQDLAQ 179

Query: 616 ALKKF--LKGNETVQLTAKVDPSLIGGMVVSIG 708
             ++   L G + V++  ++DP LI G  +  G
Sbjct: 180 IAQQVQNLTGAKNVRVKTRIDPELIAGFTIQYG 212


>07_03_1116 -
           24084162-24084201,24084481-24084570,24084640-24085220,
           24085653-24085822,24086006-24087074
          Length = 649

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
 Frame = +1

Query: 244 LEGRYASALFSAASKTKALDIVEKELCQF--QQSIKTDAKLKEFIINPTIKRSMKVDALK 417
           LE  Y S     A K KAL+  + E C+   ++     AK + F+      R   V AL 
Sbjct: 56  LEKSYKSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALS 115

Query: 418 HVANKISLSPTTGNLLGLLAENG-RLGKLEAVINAFKIMMAAHRGEVAC---EVVTAKPL 585
            V  K  +      L G+L  NG +  K+    N    + A+     A    E   A P+
Sbjct: 116 EVRQKYKV-----ELAGILDANGSKDKKVRTSTNDMNALCASEENTTASGLGEPSEASPV 170

Query: 586 DQAQRQNLE 612
           D   R  L+
Sbjct: 171 DVKPRPVLK 179


>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
          Length = 454

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 539 AAIIILKALMTASSFPKRPFSASNPSRLPVVG 444
           AA+ +L+    A++  +RP +   P RLPV+G
Sbjct: 15  AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46


>03_02_0358 +
           7784067-7784128,7784239-7785040,7785513-7785617,
           7785835-7786194
          Length = 442

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +1

Query: 541 HRGEVACEVV-----TAKPLDQAQR-QNLEAALKKFLKGNETVQLTAKVDPSLIGGM 693
           H G VA  V      T  P+D A R + +E+ L+  L+G      T   DPS  G +
Sbjct: 155 HGGRVAALVFVRDEETGAPIDDAARVRRIESRLRHVLRGGARCARTVLADPSAAGNL 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,965,677
Number of Sequences: 37544
Number of extensions: 419995
Number of successful extensions: 1021
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)