Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_H10
(949 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase su... 175 3e-44
U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase su... 173 1e-43
U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical pr... 29 6.4
U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical pr... 29 6.4
U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiestera... 29 6.4
U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiestera... 29 6.4
U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiestera... 29 6.4
U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiestera... 29 6.4
U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiestera... 29 6.4
U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiestera... 29 6.4
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 29 6.4
AF078157-12|AAG24073.1| 338|Caenorhabditis elegans Hypothetical... 28 8.5
>U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform b protein.
Length = 228
Score = 175 bits (427), Expect = 3e-44
Identities = 86/199 (43%), Positives = 133/199 (66%), Gaps = 2/199 (1%)
Frame = +1
Query: 133 IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 306
++L + + L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD
Sbjct: 12 LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQ 71
Query: 307 VEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 486
+ +L + K + K +EF+++PT+K + K A++ ++ K+ L+ TGN LGLLAENG
Sbjct: 72 ISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENG 131
Query: 487 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAK 666
RL KLE+V+++F+ +M AHRGE+ +V +A+ L + ++ L AL K K + + +T
Sbjct: 132 RLNKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYA 191
Query: 667 VDPSLIGGMVVSIGDKYVD 723
V PS++GG+VV+IGDKYVD
Sbjct: 192 VKPSILGGLVVTIGDKYVD 210
>U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform a protein.
Length = 207
Score = 173 bits (422), Expect = 1e-43
Identities = 85/186 (45%), Positives = 128/186 (68%), Gaps = 2/186 (1%)
Frame = +1
Query: 172 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIK 345
L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD + +L + K
Sbjct: 4 LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQISTDLNNVRSVYK 63
Query: 346 TDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFK 525
+ K +EF+++PT+K + K A++ ++ K+ L+ TGN LGLLAENGRL KLE+V+++F+
Sbjct: 64 DNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLESVVSSFE 123
Query: 526 IMMAAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSI 705
+M AHRGE+ +V +A+ L + ++ L AL K K + + +T V PS++GG+VV+I
Sbjct: 124 SIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVKPSILGGLVVTI 183
Query: 706 GDKYVD 723
GDKYVD
Sbjct: 184 GDKYVD 189
>U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical
protein C01B10.6b protein.
Length = 503
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 734 CYTQSTYLSPIETTMPPINEGSTLAVS-CT 648
C++QS+ ++ + TT P + GST AV+ CT
Sbjct: 180 CFSQSSCVTDVPTTPEPTSPGSTPAVTECT 209
>U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical
protein C01B10.6a protein.
Length = 506
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 734 CYTQSTYLSPIETTMPPINEGSTLAVS-CT 648
C++QS+ ++ + TT P + GST AV+ CT
Sbjct: 183 CFSQSSCVTDVPTTPEPTSPGSTPAVTECT 212
>U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforma protein.
Length = 549
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 274 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 450
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 110 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 169
Query: 451 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 555
+G + + + + + + K+ +H G V
Sbjct: 170 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 204
>U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformd protein.
Length = 674
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 274 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 450
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 235 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 294
Query: 451 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 555
+G + + + + + + K+ +H G V
Sbjct: 295 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 329
>U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformc protein.
Length = 599
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 274 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 450
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 160 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 219
Query: 451 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 555
+G + + + + + + K+ +H G V
Sbjct: 220 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 254
>U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforme protein.
Length = 612
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 274 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 450
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 173 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 232
Query: 451 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 555
+G + + + + + + K+ +H G V
Sbjct: 233 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 267
>U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformb protein.
Length = 626
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 274 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 450
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 187 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 246
Query: 451 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 555
+G + + + + + + K+ +H G V
Sbjct: 247 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 281
>U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformg protein.
Length = 673
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 274 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 450
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 234 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 293
Query: 451 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 555
+G + + + + + + K+ +H G V
Sbjct: 294 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 328
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 306 RGKRTLPVSTVYQN*CKAQGIHHQPDNKKKHEGRCVETCRQ*DQSFSYNW 455
R RTL V+++++ + I PD + KHEG CV+ + + +N+
Sbjct: 406 RESRTLKVTSIHEKPYVIEKI--MPDGRIKHEGFCVDLLDKLAEMLHFNY 453
>AF078157-12|AAG24073.1| 338|Caenorhabditis elegans Hypothetical
protein F25E5.2 protein.
Length = 338
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 265 ALFSAASKTKALDIVEKELCQFQQSIK 345
+LF+AA+KT + D+VE LC + S +
Sbjct: 134 SLFTAANKTISQDLVENGLCSKEDSFR 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,204,838
Number of Sequences: 27780
Number of extensions: 377227
Number of successful extensions: 1159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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