Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H09
         (914 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    41   0.038
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    41   0.038
UniRef50_A2G2B4 Cluster: ATPase, putative; n=1; Trichomonas vagi...    33   7.7  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 41.1 bits (92), Expect = 0.038
 Identities = 20/39 (51%), Positives = 22/39 (56%)
 Frame = +3

Query: 708 INESAXPRGXAVWXLGAXPXPRSLTRCARSFGCGERFSS 824
           I + A  R  AVW L A P  RS TRC RS GCG   S+
Sbjct: 267 IRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSA 305


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 41.1 bits (92), Expect = 0.038
 Identities = 20/30 (66%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 753 GAXPXPRSLTRCARSFGCGERFSSLXG-GN 839
           G  P PRSLTR ARSFGCGER+    G GN
Sbjct: 34  GDIPLPRSLTRYARSFGCGERYRLTDGDGN 63


>UniRef50_A2G2B4 Cluster: ATPase, putative; n=1; Trichomonas
           vaginalis G3|Rep: ATPase, putative - Trichomonas
           vaginalis G3
          Length = 585

 Score = 33.5 bits (73), Expect = 7.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -1

Query: 368 LRLGRTEGNNMLHDVLQRGAVQCWPW-C--GRPPWCSV 264
           +R+G T  ++ + D+L R A   +PW C  GRP WC +
Sbjct: 527 VRVGDTMNHSQMKDLLNRMAQSDFPWNCPHGRPTWCEI 564


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,081,084
Number of Sequences: 1657284
Number of extensions: 10044995
Number of successful extensions: 21464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21452
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83621356644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)