Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_H08
(936 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 35 0.081
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 32 0.75
01_01_0995 + 7875273-7875495,7876196-7876274,7876422-7876536,787... 30 2.3
07_01_0176 - 1244704-1245102 29 4.0
01_03_0005 + 11568545-11569119,11569179-11569191 29 5.3
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 29 7.0
05_04_0173 + 18724367-18724476,18724570-18724651,18724750-187248... 29 7.0
04_04_1351 - 32827136-32827984 29 7.0
02_03_0126 - 15536727-15537353 28 9.3
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 35.1 bits (77), Expect = 0.081
Identities = 27/84 (32%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Frame = -3
Query: 814 GXGXXPXGPHKGXXPGGXXPGXXKXPXXGXPPPXT-GGVXFXXXXSXGGGPXGKXPTXPX 638
G G P P G G P G PPP GGV G G G PT P
Sbjct: 1144 GIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPG 1203
Query: 637 LXGFXXPXPPLXKXFXPPXPPNSG 566
P PP PP P G
Sbjct: 1204 APA--PPMPPGVPGGPPPPPGGRG 1225
Score = 29.5 bits (63), Expect = 4.0
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -3
Query: 724 PPPXTGGVXFXXXXSXGGGPXG-KXPTXPXLX---GFXXPXPPLXKXFXPPXPP 575
PPP GG+ GG G + P P L G P PP+ PP PP
Sbjct: 1111 PPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPP 1164
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 31.9 bits (69), Expect = 0.75
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +3
Query: 579 GXGGKNXLXKGGX-GXXNPKRXGXVGFXPXGPPPXXXXXKXXTPPVXGGGXPXXG 740
G GG N +GG G NP R G G GP P PP GGG G
Sbjct: 425 GPGGPNRYPQGGNQGGYNPNRGGQGGGYGSGPYPQQG---RGPPPYPGGGMGGAG 476
>01_01_0995 +
7875273-7875495,7876196-7876274,7876422-7876536,
7878507-7878761
Length = 223
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 716 GGGXXXXGXFXXPXGXXPXXPPLVGXXWXPPP 811
GGG G F P P PP+VG PP
Sbjct: 22 GGGGGEYGTFQGPPSYPPPRPPVVGYPQPAPP 53
>07_01_0176 - 1244704-1245102
Length = 132
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 390 GXGGGXGGFXXX*XXGPPPGXGGXXFG 470
G GGG GGF GPP G G +G
Sbjct: 40 GGGGGGGGFFEVPWFGPPGGGGWGAWG 66
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.1 bits (62), Expect = 5.3
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = -3
Query: 724 PPPXTGGVXFXXXXSXGGGPXGKXPTXPXLXGFXXPXPPLXKXFXPPXPPNSGET 560
PPP GG GGG G PT P F P P PP +SG +
Sbjct: 114 PPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPF-LPYFPFYYYSPPPPFYSSGSS 167
Score = 28.3 bits (60), Expect = 9.3
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Frame = +3
Query: 381 FXXGXGGGXGGFXXX*XXGPPP---GXGGXXFGXXSLXXPXXPXAXGXGVG 524
+ G GGG GG PPP G GG G + P G G G
Sbjct: 75 YPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGG 125
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = -3
Query: 718 PXTGGVXFXXXXSXGGGPX--GKXPTXPXLXGFXXPXPPLXKXFXPPXPP 575
P GG + GGG G PT + P PP PP PP
Sbjct: 85 PVGGGATAADRLAAGGGMGVPGVSPTSAAVDAMMMPPPPPIDTLPPPPPP 134
>05_04_0173 +
18724367-18724476,18724570-18724651,18724750-18724840,
18725060-18725172,18725270-18725342,18725445-18725565,
18725665-18725782,18726609-18726748,18726824-18726881,
18727007-18727077,18727181-18727733
Length = 509
Score = 28.7 bits (61), Expect = 7.0
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Frame = +3
Query: 579 GXGGKNXLXKGGX-GXXNPKRXGXVGFXPXGPPPXXXXXKXXTPPVXGGGXPXXG 740
G GG + +GG G P R G G G P + PP G G G
Sbjct: 405 GPGGSSRYPQGGNQGGGYPNRGGQGGGGSYGNAPYPQQGRGPPPPYPGSGMAGTG 459
>04_04_1351 - 32827136-32827984
Length = 282
Score = 28.7 bits (61), Expect = 7.0
Identities = 33/122 (27%), Positives = 36/122 (29%), Gaps = 8/122 (6%)
Frame = +3
Query: 399 GGXGGFXXX*XXGPPPGXGGXXFGXXSLXXPXXPXAXGXGVGETVXXXXXXXXXVSPELG 578
GG G P G GG G G VG+ V+P +G
Sbjct: 24 GGSGSAPSGGGGSAPSGGGGGIGGVVGGIVGGVAPVVGGIVGKVPPVVGGVVGGVAPVVG 83
Query: 579 GXGGKNXLXKGG-XGXXNPKRXGXVGFXP-------XGPPPXXXXXKXXTPPVXGGGXPX 734
G GK GG G P G VG P G P PV GG P
Sbjct: 84 GIVGKVPPVVGGVVGGVAPVVGGIVGKVPPVVGGVVGGVAPVVGGVVGGVAPVVGGVAPV 143
Query: 735 XG 740
G
Sbjct: 144 VG 145
>02_03_0126 - 15536727-15537353
Length = 208
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 567 PELGGXGGKNXLXKGGXGXXNPK 635
P LGG GG KGG G PK
Sbjct: 164 PALGGSGGPGRRAKGGKGKVKPK 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,920
Number of Sequences: 37544
Number of extensions: 314588
Number of successful extensions: 778
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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