Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_H08
(936 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 34 0.17
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 34 0.17
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 34 0.17
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 34 0.17
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 0.68
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.6
Z70284-9|CAA94280.1| 290|Caenorhabditis elegans Hypothetical pr... 28 8.3
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 33.9 bits (74), Expect = 0.17
Identities = 39/131 (29%), Positives = 40/131 (30%), Gaps = 8/131 (6%)
Frame = +3
Query: 390 GXGGGXGGFXXX*XXGPPPGXGGXXFGXXSLXXPXXPXAXG-XGVGETVXXXXXXXXXVS 566
G GGG GG G PPG GG P P A G G G +
Sbjct: 90 GGGGGGGGCDGCCNPG-PPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQ 148
Query: 567 PELGGXGGKNXLXKGGXGXXNP-----KRXGXVGFXPXGPP-PXXXXXKXXTPPVXGG-G 725
P GG G G G P G G P GPP P P GG G
Sbjct: 149 PCPGGPPGPAG-PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPG 207
Query: 726 XPXXGFXXXPG 758
P PG
Sbjct: 208 EPGASEQGGPG 218
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 33.9 bits (74), Expect = 0.17
Identities = 39/131 (29%), Positives = 40/131 (30%), Gaps = 8/131 (6%)
Frame = +3
Query: 390 GXGGGXGGFXXX*XXGPPPGXGGXXFGXXSLXXPXXPXAXG-XGVGETVXXXXXXXXXVS 566
G GGG GG G PPG GG P P A G G G +
Sbjct: 90 GGGGGGGGCDGCCNPG-PPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQ 148
Query: 567 PELGGXGGKNXLXKGGXGXXNP-----KRXGXVGFXPXGPP-PXXXXXKXXTPPVXGG-G 725
P GG G G G P G G P GPP P P GG G
Sbjct: 149 PCPGGPPGPAG-PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPG 207
Query: 726 XPXXGFXXXPG 758
P PG
Sbjct: 208 EPGASEQGGPG 218
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 33.9 bits (74), Expect = 0.17
Identities = 39/131 (29%), Positives = 40/131 (30%), Gaps = 8/131 (6%)
Frame = +3
Query: 390 GXGGGXGGFXXX*XXGPPPGXGGXXFGXXSLXXPXXPXAXG-XGVGETVXXXXXXXXXVS 566
G GGG GG G PPG GG P P A G G G +
Sbjct: 90 GGGGGGGGCDGCCNPG-PPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQ 148
Query: 567 PELGGXGGKNXLXKGGXGXXNP-----KRXGXVGFXPXGPP-PXXXXXKXXTPPVXGG-G 725
P GG G G G P G G P GPP P P GG G
Sbjct: 149 PCPGGPPGPAG-PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPG 207
Query: 726 XPXXGFXXXPG 758
P PG
Sbjct: 208 EPGASEQGGPG 218
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 33.9 bits (74), Expect = 0.17
Identities = 39/131 (29%), Positives = 40/131 (30%), Gaps = 8/131 (6%)
Frame = +3
Query: 390 GXGGGXGGFXXX*XXGPPPGXGGXXFGXXSLXXPXXPXAXG-XGVGETVXXXXXXXXXVS 566
G GGG GG G PPG GG P P A G G G +
Sbjct: 90 GGGGGGGGCDGCCNPG-PPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQ 148
Query: 567 PELGGXGGKNXLXKGGXGXXNP-----KRXGXVGFXPXGPP-PXXXXXKXXTPPVXGG-G 725
P GG G G G P G G P GPP P P GG G
Sbjct: 149 PCPGGPPGPAG-PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPG 207
Query: 726 XPXXGFXXXPG 758
P PG
Sbjct: 208 EPGASEQGGPG 218
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.9 bits (69), Expect = 0.68
Identities = 26/92 (28%), Positives = 28/92 (30%), Gaps = 2/92 (2%)
Frame = -3
Query: 784 KGXXPGGXXPGXXKXPXXGX--PPPXTGGVXFXXXXSXGGGPXGKXPTXPXLXGFXXPXP 611
K P G P P PPP G GP G P P G P P
Sbjct: 44 KQAPPSGILPPGQSIPKPSFFIPPPVPNGFI-----PPPPGPGGIPPPPPMFAGGIPPPP 98
Query: 610 PLXKXFXPPXPPNSGETXXXXXXXXXTVSPTP 515
P+ PP PP G V+P P
Sbjct: 99 PMMGGI-PPPPPMFGAPPPPPPPSGLGVAPQP 129
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Frame = -3
Query: 724 PPPXTGGVXFXXXXSXGGGPX-----GKXPTXPXLXGFXXPXPPLXKXFXPPXPP 575
PPP GG+ GG P G P P + G P PP P PP
Sbjct: 76 PPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPP 130
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Frame = -3
Query: 769 GGXXPGXXKXPXXG--XPPPXTGGVXFXXXXSXGGGPXGKXP-TXPXLXGFXXPXPPLXK 599
GG P P G PPP GG+ GG P P P + G P PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGL----PPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 598 XFXPPXPP 575
PP PP
Sbjct: 767 GCPPPPPP 774
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/76 (31%), Positives = 25/76 (32%)
Frame = -3
Query: 793 GPHKGXXPGGXXPGXXKXPXXGXPPPXTGGVXFXXXXSXGGGPXGKXPTXPXLXGFXXPX 614
GP PGG P P PPP GG+ GGP P P
Sbjct: 725 GPPPPPPPGGLPPITGGPP----PPPPPGGLP-----PISGGPPPPPPPPGGCPPPPPPP 775
Query: 613 PPLXKXFXPPXPPNSG 566
PP PP PP G
Sbjct: 776 PPGGFKGGPPPPPPPG 791
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/79 (29%), Positives = 23/79 (29%)
Frame = -1
Query: 807 GGXXKXPTRGGXXGXXPXGXXKXPXXXXPPPXXXXXXFXXXXPGGGAXXXKXPPTXPFXG 628
GG P GG G P PP PGG PP F G
Sbjct: 724 GGPPPPPPPGGLP-PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
Query: 627 XXPPXXPWXKXFXPRXPPI 571
PP P F P P I
Sbjct: 783 GPPPPPP-PGMFAPMAPVI 800
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Frame = -3
Query: 769 GGXXPGXXKXPXXG--XPPPXTGGVXFXXXXSXGGGPXGKXP-TXPXLXGFXXPXPPLXK 599
GG P P G PPP GG+ GG P P P + G P PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGL----PPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 598 XFXPPXPP 575
PP PP
Sbjct: 767 GCPPPPPP 774
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/76 (31%), Positives = 25/76 (32%)
Frame = -3
Query: 793 GPHKGXXPGGXXPGXXKXPXXGXPPPXTGGVXFXXXXSXGGGPXGKXPTXPXLXGFXXPX 614
GP PGG P P PPP GG+ GGP P P
Sbjct: 725 GPPPPPPPGGLPPITGGPP----PPPPPGGLP-----PISGGPPPPPPPPGGCPPPPPPP 775
Query: 613 PPLXKXFXPPXPPNSG 566
PP PP PP G
Sbjct: 776 PPGGFKGGPPPPPPPG 791
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/79 (29%), Positives = 23/79 (29%)
Frame = -1
Query: 807 GGXXKXPTRGGXXGXXPXGXXKXPXXXXPPPXXXXXXFXXXXPGGGAXXXKXPPTXPFXG 628
GG P GG G P PP PGG PP F G
Sbjct: 724 GGPPPPPPPGGLP-PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
Query: 627 XXPPXXPWXKXFXPRXPPI 571
PP P F P P I
Sbjct: 783 GPPPPPP-PGMFAPMAPVI 800
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Frame = -3
Query: 769 GGXXPGXXKXPXXG--XPPPXTGGVXFXXXXSXGGGPXGKXP-TXPXLXGFXXPXPPLXK 599
GG P P G PPP GG+ GG P P P + G P PP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGL----PPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Query: 598 XFXPPXPP 575
PP PP
Sbjct: 350 GCPPPPPP 357
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/76 (31%), Positives = 25/76 (32%)
Frame = -3
Query: 793 GPHKGXXPGGXXPGXXKXPXXGXPPPXTGGVXFXXXXSXGGGPXGKXPTXPXLXGFXXPX 614
GP PGG P P PPP GG+ GGP P P
Sbjct: 308 GPPPPPPPGGLPPITGGPP----PPPPPGGLP-----PISGGPPPPPPPPGGCPPPPPPP 358
Query: 613 PPLXKXFXPPXPPNSG 566
PP PP PP G
Sbjct: 359 PPGGFKGGPPPPPPPG 374
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/79 (29%), Positives = 23/79 (29%)
Frame = -1
Query: 807 GGXXKXPTRGGXXGXXPXGXXKXPXXXXPPPXXXXXXFXXXXPGGGAXXXKXPPTXPFXG 628
GG P GG G P PP PGG PP F G
Sbjct: 307 GGPPPPPPPGGLP-PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 365
Query: 627 XXPPXXPWXKXFXPRXPPI 571
PP P F P P I
Sbjct: 366 GPPPPPP-PGMFAPMAPVI 383
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/75 (29%), Positives = 22/75 (29%)
Frame = -3
Query: 799 PXGPHKGXXPGGXXPGXXKXPXXGXPPPXTGGVXFXXXXSXGGGPXGKXPTXPXLXGFXX 620
P P G P P G PPP G G P G P P G
Sbjct: 264 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP-PPQAGG--- 319
Query: 619 PXPPLXKXFXPPXPP 575
PP PP PP
Sbjct: 320 -SPPPAGTGSPPPPP 333
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/76 (28%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 PXGPHKGXXPGGXXPGXXKXPXXG-XPPPXTGGVXFXXXXSXGGGPXGKXPTXPXLXGFX 623
P P KG P P G PPP TG S P G P P
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 298
Query: 622 XPXPPLXKXFXPPXPP 575
P PP PP
Sbjct: 299 PPPPPRGSPPTGSLPP 314
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/75 (29%), Positives = 22/75 (29%)
Frame = -3
Query: 799 PXGPHKGXXPGGXXPGXXKXPXXGXPPPXTGGVXFXXXXSXGGGPXGKXPTXPXLXGFXX 620
P P G P P G PPP G G P G P P G
Sbjct: 285 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP-PPQAGG--- 340
Query: 619 PXPPLXKXFXPPXPP 575
PP PP PP
Sbjct: 341 -SPPPAGTGSPPPPP 354
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/76 (28%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 PXGPHKGXXPGGXXPGXXKXPXXG-XPPPXTGGVXFXXXXSXGGGPXGKXPTXPXLXGFX 623
P P KG P P G PPP TG S P G P P
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 319
Query: 622 XPXPPLXKXFXPPXPP 575
P PP PP
Sbjct: 320 PPPPPRGSPPTGSLPP 335
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/75 (29%), Positives = 22/75 (29%)
Frame = -3
Query: 799 PXGPHKGXXPGGXXPGXXKXPXXGXPPPXTGGVXFXXXXSXGGGPXGKXPTXPXLXGFXX 620
P P G P P G PPP G G P G P P G
Sbjct: 270 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP-PPQAGG--- 325
Query: 619 PXPPLXKXFXPPXPP 575
PP PP PP
Sbjct: 326 -SPPPAGTGSPPPPP 339
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/76 (28%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 PXGPHKGXXPGGXXPGXXKXPXXG-XPPPXTGGVXFXXXXSXGGGPXGKXPTXPXLXGFX 623
P P KG P P G PPP TG S P G P P
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 304
Query: 622 XPXPPLXKXFXPPXPP 575
P PP PP
Sbjct: 305 PPPPPRGSPPTGSLPP 320
>Z70284-9|CAA94280.1| 290|Caenorhabditis elegans Hypothetical
protein K07F5.11 protein.
Length = 290
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/72 (26%), Positives = 22/72 (30%)
Frame = -3
Query: 781 GXXPGGXXPGXXKXPXXGXPPPXTGGVXFXXXXSXGGGPXGKXPTXPXLXGFXXPXPPLX 602
G P G G K G PPP T + + GGG G + G P
Sbjct: 24 GGGPAGGGGGASKVGGAGAPPPGTS--VYMGAGAGGGGGGGAQSAYFAVGGAPVGGAPAA 81
Query: 601 KXFXPPXPPNSG 566
P P G
Sbjct: 82 VPMGAPPPAGGG 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,519,702
Number of Sequences: 27780
Number of extensions: 192756
Number of successful extensions: 528
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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