Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H07
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 492 PPPXXPGPXPSGGGXGXPPP 551
           PPP  P P  +G G   PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 480 PXPFPPPXXPGPXPSGGGXGXPPPXGG 560
           P P P P  P P P  GG   PPP  G
Sbjct: 744 PAPAPIPVPP-PAPIMGGPPPPPPPPG 769



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +3

Query: 795 PXXXPTPXXLXGXPVPXFSPXGXXXGAXXPXPPXGXGXPXXGG 923
           P   P P  + G P P   P G   GA  P PP        GG
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPG-VAGAGPPPPPPPPPAVSAGG 789


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/66 (25%), Positives = 20/66 (30%)
 Frame = +1

Query: 727  GXTPXXNXKNPGXSPLXNXPPXXLSXSPPXXXXXXXXXPPFPPLGXXXGPFXXXPPXXXX 906
            G  P      P   P    PP   + +PP         P  PP+    GP    PP    
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPM--PAGPPSAPPPPLPA 1737

Query: 907  XXXPGV 924
               P V
Sbjct: 1738 SSAPSV 1743



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 480  PXPFPPPXXPGPXPSGGGXGXPPP 551
            P   PPP    P P+G     PPP
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 480  PXPFPPPXXPGPXPSGGGXGXPPP 551
            P P P    P P  S G    PPP
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPP 1065


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,813
Number of Sequences: 5004
Number of extensions: 22636
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)