Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H03
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.72 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 169  SVPSHRSNITARVTCSSPPLKIQNQ 243
            S  S+ +N+T  +T   PP+K+Q+Q
Sbjct: 951  SSASNVTNVTTNLTTILPPVKVQSQ 975



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 898 HFDHHQVQHDSRIGLRAAXL 839
           HF HHQ+Q  +  GL+   L
Sbjct: 917 HFPHHQIQVSTSAGLQTIRL 936


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = -3

Query: 397 FLPVSRSHNLQE------LSPPPVMRLIDCQSTS 314
           ++P S S NLQE      L  PP+ ++ DC +TS
Sbjct: 398 YIPESSS-NLQEKTKIDLLEIPPIRKISDCSTTS 430


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
 Frame = +3

Query: 219 SAAKDSKPNVWWSLNGERLGTFNG----------HGGVIWCLDVDWQSINLITGGGDSSC 368
           SAA +  P V W+L+G  L T NG          HG VI  +++   S  ++  GG+ SC
Sbjct: 444 SAAGNPTPQVTWALDGFALPT-NGRFMIGQYVTVHGDVISHVNI---SHVMVEDGGEYSC 499


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
 Frame = +3

Query: 219 SAAKDSKPNVWWSLNGERLGTFNG----------HGGVIWCLDVDWQSINLITGGGDSSC 368
           SAA +  P V W+L+G  L T NG          HG VI  +++   S  ++  GG+ SC
Sbjct: 444 SAAGNPTPQVTWALDGFALPT-NGRFMIGQYVTVHGDVISHVNI---SHVMVEDGGEYSC 499


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +1

Query: 262  TANVLALSTATVV*YGALTSTGSQLISSQVVATVPAGYGIWRQAKILQHSNPTLL 426
            T   L   T  +       S  + +I+   V  +P+G GI+ +   +  S+ T+L
Sbjct: 1089 TCTTLTSQTIRISWMSPPLSAANGVITGYKVIVIPSGGGIYTKDTKITSSSETIL 1143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,066
Number of Sequences: 438
Number of extensions: 6036
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)