Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H02
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    75   1e-14
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    75   1e-14
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    29   1.1  
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    27   4.5  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    26   6.0  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 34/81 (41%), Positives = 47/81 (58%)
 Frame = +2

Query: 119 LRXXXVIGRKLXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 298
           L+   V+GRK+          ++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV    
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 299 XXXXXXXXXXNFGIWLRYESR 361
                      FGIW+RY+SR
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSR 83



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 26/42 (61%), Positives = 31/42 (73%)
 Frame = +3

Query: 363 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 488
           SG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I+KV
Sbjct: 84  SGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKV 125


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 34/81 (41%), Positives = 47/81 (58%)
 Frame = +2

Query: 119 LRXXXVIGRKLXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 298
           L+   V+GRK+          ++MR+F+P+  VAKSR+WYFL+ + K KK TGEIV    
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 299 XXXXXXXXXXNFGIWLRYESR 361
                      FGIW+RY+SR
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSR 83



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 26/42 (61%), Positives = 31/42 (73%)
 Frame = +3

Query: 363 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 488
           SG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+I+KV
Sbjct: 84  SGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKV 125


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 198 SLRIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRK---APSRLRILVSGYAMSLVS 365
           S ++   P++V   S D+ + SRRP +  S  RKF  K    PS  + L  G   SL S
Sbjct: 295 SPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSLKS 353


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 204 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRILVSGYAMSLVSGVHNMY 383
           ++ + PN +S IS  N R + R LVK  L+ +      SR RI  +  A  L  G H  Y
Sbjct: 21  KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRL--GRHTGY 78


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 204 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRILVSGYAMSLVSGVHNMY 383
           ++ + PN +S IS  N R + R L+K  L+ +      SR RI  +  A  L  G H  Y
Sbjct: 21  KVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRL--GRHTGY 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,142
Number of Sequences: 5004
Number of extensions: 31865
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)