Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H02
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538...    70   2e-12
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984...    69   4e-12
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615...    57   2e-08

>01_06_0730 -
           31552747-31553088,31553583-31553646,31553743-31553858,
           31553964-31553978
          Length = 178

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 31/76 (40%), Positives = 46/76 (60%)
 Frame = +2

Query: 134 VIGRKLXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXX 313
           V+GR L          Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I+         
Sbjct: 11  VVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKN 70

Query: 314 XXXXXNFGIWLRYESR 361
                N+GIWLRY+SR
Sbjct: 71  PTTIKNYGIWLRYQSR 86



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +3

Query: 363 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVI 497
           +G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   +
Sbjct: 87  TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATV 131


>05_07_0131 +
           27898028-27898042,27898159-27898274,27898361-27898424,
           27899450-27899791
          Length = 178

 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 46/76 (60%)
 Frame = +2

Query: 134 VIGRKLXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXX 313
           V+GR L          Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++         
Sbjct: 11  VVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFERN 70

Query: 314 XXXXXNFGIWLRYESR 361
                N+GIWLRY+SR
Sbjct: 71  PTTIKNYGIWLRYQSR 86



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +3

Query: 363 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVI 497
           +G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   +
Sbjct: 87  TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATV 131


>01_06_0180 -
           27260099-27260440,27261236-27261350,27261403-27261518,
           27261594-27261608
          Length = 195

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +3

Query: 363 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVI 497
           +G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   +
Sbjct: 104 TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATV 148



 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 17/93 (18%)
 Frame = +2

Query: 134 VIGRKLXXXXXXXXXXYKMRIFSPDPIVAKSRF----------W-------YFLRQLKKF 262
           V+GR L          Y+M++++ + + AKS+F          W       YFLR+LKK 
Sbjct: 11  VVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFLRKLKKV 70

Query: 263 KKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 361
           KK+ G+++              N+GIWLRY+SR
Sbjct: 71  KKSNGQMLAINEIFERNPTTIKNYGIWLRYQSR 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,303,669
Number of Sequences: 37544
Number of extensions: 206608
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)