Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_H02
(860 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a pr... 91 6e-18
BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a ... 91 6e-18
BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a ... 91 6e-18
BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a ... 91 6e-18
AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a ... 91 6e-18
AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a ... 91 6e-18
X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA ... 90 8e-18
AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-... 87 8e-17
AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a ... 45 3e-04
>L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 90.6 bits (215), Expect = 6e-18
Identities = 44/87 (50%), Positives = 53/87 (60%)
Frame = +2
Query: 101 MXAKGQLRXXXVIGRKLXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 280
M A G LR V+GR L Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 281 IVXXXXXXXXXXXXXXNFGIWLRYESR 361
IV NFGIWLRY+SR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSR 87
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/75 (60%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Frame = +3
Query: 309 KAPSRLRILVSGYAMSLVSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 488
K+P R++ SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KV
Sbjct: 70 KSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKV 129
Query: 489 EVIKGC-CVSPSTGQ 530
E I C P+ Q
Sbjct: 130 EEIAASKCRRPAVKQ 144
>BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 90.6 bits (215), Expect = 6e-18
Identities = 44/87 (50%), Positives = 53/87 (60%)
Frame = +2
Query: 101 MXAKGQLRXXXVIGRKLXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 280
M A G LR V+GR L Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 281 IVXXXXXXXXXXXXXXNFGIWLRYESR 361
IV NFGIWLRY+SR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSR 87
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/75 (60%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Frame = +3
Query: 309 KAPSRLRILVSGYAMSLVSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 488
K+P R++ SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KV
Sbjct: 70 KSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKV 129
Query: 489 EVIKGC-CVSPSTGQ 530
E I C P+ Q
Sbjct: 130 EEIAASKCRRPAVKQ 144
>BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 90.6 bits (215), Expect = 6e-18
Identities = 44/87 (50%), Positives = 53/87 (60%)
Frame = +2
Query: 101 MXAKGQLRXXXVIGRKLXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 280
M A G LR V+GR L Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 281 IVXXXXXXXXXXXXXXNFGIWLRYESR 361
IV NFGIWLRY+SR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSR 87
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/75 (60%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Frame = +3
Query: 309 KAPSRLRILVSGYAMSLVSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 488
K+P R++ SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KV
Sbjct: 70 KSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKV 129
Query: 489 EVIKGC-CVSPSTGQ 530
E I C P+ Q
Sbjct: 130 EEIAASKCRRPAVKQ 144
>BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 90.6 bits (215), Expect = 6e-18
Identities = 44/87 (50%), Positives = 53/87 (60%)
Frame = +2
Query: 101 MXAKGQLRXXXVIGRKLXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 280
M A G LR V+GR L Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 281 IVXXXXXXXXXXXXXXNFGIWLRYESR 361
IV NFGIWLRY+SR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSR 87
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/75 (60%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Frame = +3
Query: 309 KAPSRLRILVSGYAMSLVSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 488
K+P R++ SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KV
Sbjct: 70 KSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKV 129
Query: 489 EVIKGC-CVSPSTGQ 530
E I C P+ Q
Sbjct: 130 EEIAASKCRRPAVKQ 144
>AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a
variant protein.
Length = 176
Score = 90.6 bits (215), Expect = 6e-18
Identities = 44/87 (50%), Positives = 53/87 (60%)
Frame = +2
Query: 101 MXAKGQLRXXXVIGRKLXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 280
M A G LR V+GR L Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 281 IVXXXXXXXXXXXXXXNFGIWLRYESR 361
IV NFGIWLRY+SR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSR 87
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/75 (60%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Frame = +3
Query: 309 KAPSRLRILVSGYAMSLVSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 488
K+P R++ SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KV
Sbjct: 70 KSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTAAGAVTQCYRDMGARHRARAHSIQIMKV 129
Query: 489 EVIKGC-CVSPSTGQ 530
E I C P+ Q
Sbjct: 130 EEIAASKCRRPAVKQ 144
>AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 90.6 bits (215), Expect = 6e-18
Identities = 44/87 (50%), Positives = 53/87 (60%)
Frame = +2
Query: 101 MXAKGQLRXXXVIGRKLXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 280
M A G LR V+GR L Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 281 IVXXXXXXXXXXXXXXNFGIWLRYESR 361
IV NFGIWLRY+SR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSR 87
Score = 89.4 bits (212), Expect = 1e-17
Identities = 45/75 (60%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Frame = +3
Query: 309 KAPSRLRILVSGYAMSLVSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 488
K+P R++ SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KV
Sbjct: 70 KSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKV 129
Query: 489 EVIKGC-CVSPSTGQ 530
E I C P+ Q
Sbjct: 130 EEIAASKCRRPAVKQ 144
>X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA for
ORF. ).
Length = 140
Score = 90.2 bits (214), Expect = 8e-18
Identities = 47/82 (57%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = +3
Query: 288 LLRKFQRKAPSRLRILVSGYAMSLVSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAH 467
LL + K+P R++ + SG HNMYREYRDL+ GAVTQCYRDMGARHRARAH
Sbjct: 27 LLWQVFEKSPLRVKNFGIWLSYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAH 86
Query: 468 SIQIIKVEVIK-GCCVSPSTGQ 530
SIQI+KVE I C P+ Q
Sbjct: 87 SIQIMKVEEIAVSKCRRPAVKQ 108
>AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein
L18a-like protein protein.
Length = 136
Score = 87.0 bits (206), Expect = 8e-17
Identities = 42/87 (48%), Positives = 52/87 (59%)
Frame = +2
Query: 101 MXAKGQLRXXXVIGRKLXXXXXXXXXXYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 280
M A G LR V+GR+L Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRRLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 281 IVXXXXXXXXXXXXXXNFGIWLRYESR 361
V NFGIWLR +SR
Sbjct: 61 TVYCGQVFEKSPLRVKNFGIWLRCDSR 87
Score = 85.8 bits (203), Expect = 2e-16
Identities = 41/63 (65%), Positives = 46/63 (73%)
Frame = +3
Query: 309 KAPSRLRILVSGYAMSLVSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 488
K+P R++ SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+ V
Sbjct: 70 KSPLRVKNFGIWLRCDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMMV 129
Query: 489 EVI 497
E I
Sbjct: 130 EEI 132
>AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a
protein.
Length = 66
Score = 45.2 bits (102), Expect = 3e-04
Identities = 23/34 (67%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = +3
Query: 432 RDMGARHRARAHSIQIIKVEVIKGC-CVSPSTGQ 530
RDMGARHRARAHSIQI+KVE I C P+ Q
Sbjct: 1 RDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQ 34
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,324,160
Number of Sequences: 237096
Number of extensions: 1095515
Number of successful extensions: 1652
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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