Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_G22
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321... 31 1.2
02_05_0860 - 32296743-32296769,32297328-32297357,32298432-322985... 30 2.1
02_04_0018 - 18943015-18943734 30 2.8
06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258 29 5.0
04_03_0798 + 19798982-19799860 29 6.6
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.7
06_01_0372 + 2684208-2684390,2684867-2684968,2685197-2685290,268... 28 8.7
>03_01_0418 -
3211687-3211933,3212016-3212164,3212443-3212551,
3212650-3212840,3212967-3213102,3213216-3213716,
3213819-3213923,3214008-3214095,3214195-3214266,
3214692-3214762,3215726-3216008,3216388-3216463
Length = 675
Score = 31.1 bits (67), Expect = 1.2
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Frame = +2
Query: 359 PLPRSLT-RCARSFGC-GERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGTVKRPRCW 532
P P++ R FGC + +R Y + QG E + P TVK+ +
Sbjct: 109 PSPKTQEKRLGSLFGCMSVPLRNNERWQQHYQEEQGGDDEWRGSSFTRREPSTVKKSKTE 168
Query: 533 RFSIGSAPLTSITKIDAQVRGGETRQDYKIPGVPPGSSLVRSPVPTLPLTGYLSAFLPS 709
R S S + KID DYKI V + RSP T+ L +L A P+
Sbjct: 169 RSSRRSHERSRRGKIDLDAAEATVTLDYKI-FVATWNVGGRSPPNTMSLEDWLHAAPPA 226
>02_05_0860 -
32296743-32296769,32297328-32297357,32298432-32298503,
32298967-32299812
Length = 324
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 557 LTSITKIDAQVRGGETRQDYKIPGVPPGSSLVRSPVPTLP 676
L IT + VR G R+D +P VPP + + VP P
Sbjct: 129 LGEITLEEFLVRAGVVREDMSVPPVPPAPTPTAAAVPPPP 168
>02_04_0018 - 18943015-18943734
Length = 239
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 503 PGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKIPGVPPGSSLVRSPVPTL 673
P T +R F + + +RG R ++ P +PPGSSL P L
Sbjct: 58 PATKERHWLGTFDTAEEAAVAYDRAARTIRGAAARTNFAYPDLPPGSSLTPYLSPDL 114
>06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258
Length = 522
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -1
Query: 748 IPTA*XMRKRHASRREKGGQVSXKRQGRNRRAHEGASRGNAWYLIVLSGFAT 593
IPT +R+RH +++ +G ++ R+ + A E + GN ++L AT
Sbjct: 248 IPTKTNLRRRHLAKKVRGTLMAIIRERQAAAAKEDSGHGNDLLGLMLEANAT 299
>04_03_0798 + 19798982-19799860
Length = 292
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +2
Query: 503 PGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKIPGVPPGSSLVRSPVPTL 673
P T +R F + + +RG R ++ P +PPGSS+ P L
Sbjct: 70 PATKERHWLGTFDTAEEAAVAYDRAARSLRGARARTNFAYPDLPPGSSVTPYLSPDL 126
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 359 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 514
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 308 NESAN---ARGEAVCVLGALPLPRSLTRCAR 391
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_01_0372 +
2684208-2684390,2684867-2684968,2685197-2685290,
2685450-2685532,2685684-2685773,2686931-2687173
Length = 264
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +2
Query: 485 QKASKRPGTVKRPRCWRFSIGSAPLTSITKI-DAQVRGGETRQDYKIPGVPPGSSLV-RS 658
Q SK+ + P S ++P ++ + +A + E IP + +SL
Sbjct: 187 QDFSKKNAEAELPTVTSHSAAASPAGNVVSVTEADLESSEVTAA-NIPDITEHASLSSHK 245
Query: 659 PVPTLPLTGYLSAFLPS 709
PT P+T LS +PS
Sbjct: 246 TTPTKPMTNMLSCLIPS 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,797,793
Number of Sequences: 37544
Number of extensions: 497387
Number of successful extensions: 1361
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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