Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G22
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z81057-5|CAB02917.2|  846|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 538 FHRLRPPDEHHKNRRSSQRWRNPTGL*DTRRSPWKLPRALSCSDPA 675
           F+ + PP+ H++ R  +Q + +          PW  PR  + +DPA
Sbjct: 7   FNPISPPNNHYRPRSPTQSYSSNA---TNYEQPWNSPRFRAPADPA 49


>Z81057-5|CAB02917.2|  846|Caenorhabditis elegans Hypothetical
           protein F10D11.6 protein.
          Length = 846

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = -1

Query: 667 RNRRAHEGASRGNAWYLIV--LSGFATS-----DLSVDFCDARQGGGAYGKTPATRPFYG 509
           R    H   S+ N  YL +  +  +ATS     DL+ +F    QGG  +G  P   P+YG
Sbjct: 443 RQIAGHLDMSKLNDLYLSLQYIQSYATSNDYSIDLTGEFSPYGQGGTPFGPFPTQFPYYG 502


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,244,257
Number of Sequences: 27780
Number of extensions: 380025
Number of successful extensions: 961
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)