Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_G21
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 257 2e-69
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 73 7e-14
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 64 3e-11
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 52 1e-07
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 50 4e-07
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 44 2e-05
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 29 1.2
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 3.6
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 4.7
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 26 8.2
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 257 bits (629), Expect = 2e-69
Identities = 112/188 (59%), Positives = 152/188 (80%)
Frame = +2
Query: 164 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 343
MSI+ YNGG+ VAM G++CVAIA+D R G+Q+ +++ NFPKVF MG Y+GL GLATD
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60
Query: 344 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 523
QT+++ ++++NLY+ +E R ++PKTF+ ++S+ LYE+RFGPYF PV+AG+ DN P+
Sbjct: 61 QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVS-NDNTPF 119
Query: 524 VCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAI 703
+C D IGC + EDF+VSGT +EQLYGMCE+++EPNL+PD+LFETISQAL+NA DRD I
Sbjct: 120 ICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCI 179
Query: 704 SGWGAVVY 727
SGWG VVY
Sbjct: 180 SGWGCVVY 187
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 72.5 bits (170), Expect = 7e-14
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +2
Query: 182 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNF-PKVFQMGPTLYVGLPGLATDTQTVFQ 358
NGG VA+ G +A D R + ++T F P+V ++G L +G G D + +
Sbjct: 12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70
Query: 359 RLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMD 538
R++ R++LY R M ++ + M+ LLY +RF PY++ +AG+D + + + + D
Sbjct: 71 RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDK-EGKGEIYSFD 129
Query: 539 LIG 547
+G
Sbjct: 130 PVG 132
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 64.1 bits (149), Expect = 3e-11
Identities = 44/175 (25%), Positives = 83/175 (47%)
Frame = +2
Query: 185 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 364
G + A++ +D V +A D R + A + K+ Q+ ++ G A DTQTV L
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 365 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLI 544
K+ +++Y ++ T + + S + Y+ + ++AG D V ++ L
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNK-NMLSAGLIVAGYDEKTGGD-VYSIPLG 141
Query: 545 GCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISG 709
G ++ + + G+ S +YG C+A + N+ +E E + A+ A +RD SG
Sbjct: 142 GSLHK-QPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSG 195
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 52.0 bits (119), Expect = 1e-07
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Frame = +2
Query: 185 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 364
G +V+A+K D V IA D + + ++ ++G VG G +D Q + QRL
Sbjct: 43 GSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI-QRL 101
Query: 365 KFRMNLYE--LKENRMMRPKTFSAMLSNLLYERR--FGPYFIEPVIAGLDPYDNQPYVCN 532
++ + E + ++P LS +LY RR PY+ + ++AG+D + +PYV
Sbjct: 102 LEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAF 161
Query: 533 MDLIG 547
DL G
Sbjct: 162 ADLRG 166
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 50.0 bits (114), Expect = 4e-07
Identities = 44/182 (24%), Positives = 75/182 (41%)
Frame = +2
Query: 182 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQR 361
+G +A + Q + + D R S KV ++ P L L G A D Q
Sbjct: 60 HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETV 119
Query: 362 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 541
L L++L+ ++ S +LSN+ Y + + ++AG Y + D
Sbjct: 120 LGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSD- 178
Query: 542 IGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAV 721
G + + F V G+ S YG+ ++ + +L E +++V A RDA SG
Sbjct: 179 -GTRLKGDLFSV-GSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVN 236
Query: 722 VY 727
+Y
Sbjct: 237 LY 238
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 44.4 bits (100), Expect = 2e-05
Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 4/169 (2%)
Frame = +2
Query: 185 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 364
G +A++G +C+ I +++ + Q VS NF K+ + + + GL D + + +
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVS-NFQKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 365 KFRMNLYELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQPYVCN 532
+ ++L + + + ++ + Y + G P+ + +IAG D DN P V
Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQ 148
Query: 533 MDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALV 679
+ G N + + G S+ E W+ L DE +L+
Sbjct: 149 TEPAGIYNAWKATAI-GRASKAAREYLEKNWKEGLSRDETIHLAVSSLL 196
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 188 GAVVAMKGQD-CVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 337
GA+ +D VA A D G+ S + +VF++G L VG+ G T
Sbjct: 407 GALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNT 457
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -2
Query: 714 PQPEMASRSAALTRACEIVSKSSSGFKLGSQRASHIPYSCSEQVPDTTK 568
P P+ ++ A R +S SSS FK +Q SH+P +E VP +K
Sbjct: 267 PTPDNSAVIEAARRTYSSISSSSSPFKKKTQ--SHLPNRTTE-VPSISK 312
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 92 IQYFELITLQ*FQVKKCLSFYITNMSIL----AYNGGAVVAMK 208
++YF+ + + +VK SF+I N +L AYNG V +K
Sbjct: 441 LKYFDQVVVGLKEVKDAFSFFIFNRFVLVYVPAYNGVDPVTLK 483
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 644 DELFETISQALVNAADRDAISG 709
DEL +T+S +AAD DA+ G
Sbjct: 298 DELLDTLSTTSPDAADDDALQG 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,548,905
Number of Sequences: 5004
Number of extensions: 76217
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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