Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_G21
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 226 2e-59
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 53 2e-07
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 48 9e-06
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 48 9e-06
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 46 4e-05
U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical pr... 36 0.039
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 36 0.051
U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF016451-1|AAB66002.2| 294|Caenorhabditis elegans Serpentine re... 28 7.8
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 226 bits (552), Expect = 2e-59
Identities = 103/205 (50%), Positives = 138/205 (67%)
Frame = +2
Query: 164 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 343
MSI++Y GG VVAM G +CV IA+D R G Q T++T+ KV ++ +YVGL G +D
Sbjct: 1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60
Query: 344 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 523
+TV +++ FR NLYEL+ENR ++P+ S M+SNL Y+ RFG YF EP++AGLD N+PY
Sbjct: 61 RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPY 119
Query: 524 VCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAI 703
+C MD IGC + P DFV GT E L G+CE W N+KPDELFE +Q++++ +RDA
Sbjct: 120 ICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAA 179
Query: 704 SGWGAVVYXXXXXXXXXXHVXTRMD 778
SGWGAVVY + RMD
Sbjct: 180 SGWGAVVYTITKDKVNVSTIKARMD 204
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 53.2 bits (122), Expect = 2e-07
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 1/176 (0%)
Frame = +2
Query: 185 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 364
G ++AM+ V + TD R + S K+ + + V G A DTQ +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 365 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLD-PYDNQPYVCNMDL 541
K+ +++Y + EN+ + S + LY R ++AG D Q Y
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIP--- 138
Query: 542 IGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISG 709
IG + SG+ S + G ++ W PNL +E + QA+ A RD SG
Sbjct: 139 IGGFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGSSG 194
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 48.0 bits (109), Expect = 9e-06
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Frame = +2
Query: 185 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQR 361
GG+ A+ G++ +A+D R + T + Q + + + G D + +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 362 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 541
L+ R++ Y M + +LS LY RRF PY+ ++AG+D + + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDP 169
Query: 542 IGC 550
IGC
Sbjct: 170 IGC 172
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 48.0 bits (109), Expect = 9e-06
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Frame = +2
Query: 185 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQR 361
GG+ A+ G++ +A+D R + T + Q + + + G D + +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 362 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 541
L+ R++ Y M + +LS LY RRF PY+ ++AG+D + + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDP 169
Query: 542 IGC 550
IGC
Sbjct: 170 IGC 172
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 46.0 bits (104), Expect = 4e-05
Identities = 40/163 (24%), Positives = 71/163 (43%)
Frame = +2
Query: 221 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 400
+ +A D R S + K+ +G + + G A D Q + + LYEL+E
Sbjct: 83 IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142
Query: 401 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVS 580
+ S +N LY R + ++AG D P + +D G + + V
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD--KKGPQIFKVDSEGDRCQLKVCSV- 199
Query: 581 GTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISG 709
G+ S YG+ + ++P + DE + +A+++A RD+ SG
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRDSGSG 242
>U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical
protein F58F12.1 protein.
Length = 163
Score = 35.9 bits (79), Expect = 0.039
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +2
Query: 569 FVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVV 724
FV SGT S + G C+ L E LK +E+ E+ ++A ++AA R SG G+ V
Sbjct: 91 FVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAAQR--ASGEGSEV 140
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 35.5 bits (78), Expect = 0.051
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Frame = +2
Query: 185 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 364
G V ++G+DC+ I +K+ I A K+ + + + GL+ D + + R
Sbjct: 30 GSTAVGVRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRA 88
Query: 365 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRF------GPYFIEPVIAGLDPYDNQP 520
+ Y+L + S ++N ++RF P+ I +I G D +D P
Sbjct: 89 RIECQSYKLTLEDPVTVAYISRYIANT--KQRFTQSPGRRPFGISMLIGGFD-HDGTP 143
>U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical
protein ZK742.3 protein.
Length = 447
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 200 AMKGQDCVAIATDKRFGIQAQTVSTN 277
AMK +AIA G+QAQT TN
Sbjct: 113 AMKSDGALAIAQTNHIGVQAQTAYTN 138
>AF016451-1|AAB66002.2| 294|Caenorhabditis elegans Serpentine
receptor, class x protein38 protein.
Length = 294
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 101 FELITLQ*FQVKKCLSFYITNMSILAYNGGAVVAMKG 211
F LITL FQ+ C ++Y Y+GGA+ ++ G
Sbjct: 132 FILITLF-FQILGCQNYYNAEYRAFQYSGGAICSLYG 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,576,251
Number of Sequences: 27780
Number of extensions: 431116
Number of successful extensions: 920
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -