Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_G20
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 73 4e-14
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 63 5e-11
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 58 1e-09
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 58 2e-09
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 58 2e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 56 8e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 54 3e-08
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 52 1e-07
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 52 1e-07
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 49 7e-07
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 48 2e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 3e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 47 3e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 47 4e-06
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 46 7e-06
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 45 1e-05
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 2e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 3e-05
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 43 5e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 43 5e-05
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 42 1e-04
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 42 1e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 42 1e-04
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 41 2e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 40 3e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 40 4e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 6e-04
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 38 0.002
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.004
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.005
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 36 0.005
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.012
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 35 0.012
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 35 0.012
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.022
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 34 0.029
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.050
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 31 0.27
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 30 0.47
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.61
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 29 0.61
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 29 0.81
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 1.1
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 28 1.9
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 5.7
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 7.6
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 73.3 bits (172), Expect = 4e-14
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Frame = +1
Query: 445 SNKEMKVNWATSPGNQPKT-DTSNHHHIFVGDLSPEIETNILREAFAP-FGEISNCRIVR 618
+N K+NWA+ G + K+ ++ + IFVGDLSP + + FA + + +I+
Sbjct: 161 TNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMT 220
Query: 619 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 765
DPQT S+GY FV F + D ++A+ M GQ G R IR +T K A
Sbjct: 221 DPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269
Score = 48.8 bits (111), Expect = 9e-07
Identities = 32/87 (36%), Positives = 42/87 (48%)
Frame = +1
Query: 502 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 681
DT+N +FVG LS + L+ F FGEI +I KG FV FV + A
Sbjct: 299 DTANST-VFVGGLSKFVSEEELKYLFQNFGEIVYVKIP------PGKGCGFVQFVNRQSA 351
Query: 682 EAAIQAMNGQWLGSRSIRTNWSTRKPP 762
E AI + G LG+ IR +W + P
Sbjct: 352 EIAINQLQGYPLGNSRIRLSWGRNQNP 378
Score = 39.5 bits (88), Expect = 6e-04
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +1
Query: 433 SEWSSNKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 612
S S N E N+ +S T+ +++G+L P + +++ + G+ ++
Sbjct: 69 SNESGNSENTSNYGSSRDENVYQKTT----LWMGELEPWVTEAFIQQVWNTLGKAVKVKL 124
Query: 613 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI-RTNWST 750
+R+ T + GY FV F +A +A+ N G+ + + NW++
Sbjct: 125 IRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWAS 171
Score = 33.5 bits (73), Expect = 0.038
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +3
Query: 255 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PG-NDPYAFLEF 389
TL++G L+P VTE F+ ++ +G K+IR G N Y F+EF
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEF 141
Score = 29.1 bits (62), Expect = 0.81
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +3
Query: 255 TLYVGNLDPSVTEVFLCTLF-GQIGDVKGCKIIREPGND---PYAFLEFT 392
+++VG+L P+V E + +LF + K KI+ +P + Y F+ FT
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 62.9 bits (146), Expect = 5e-11
Identities = 38/117 (32%), Positives = 57/117 (48%)
Frame = +1
Query: 433 SEWSSNKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 612
SE +S + AT G P T S ++VG+L P + +L E F G +++ R+
Sbjct: 57 SESTSTPTNASSVATPSGTAP-TSAS----LYVGELDPSVTEAMLFELFNSIGPVASIRV 111
Query: 613 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 783
RD T +S GYA+V+F D E A+ +N + R R WS R P + + G
Sbjct: 112 CRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTG 168
Score = 55.2 bits (127), Expect = 1e-08
Identities = 28/91 (30%), Positives = 48/91 (52%)
Frame = +1
Query: 460 KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKS 639
++ W+ + K T N +F+ +L P I+ L + F+ FG+I +C++ D + +
Sbjct: 152 RIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNA 207
Query: 640 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 732
KGY FV F A AAI+ +NG L + +
Sbjct: 208 KGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = +1
Query: 508 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 687
+N ++++ +L EI + F FGEI++ +V+D Q K +G+ FV++ A+
Sbjct: 258 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQK 316
Query: 688 AIQAMN 705
A+ +N
Sbjct: 317 AVDELN 322
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +3
Query: 255 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 356
+LYVG LDPSVTE L LF IG V ++ R+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRD 114
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 258 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCH 398
+Y+ NLD +TE LFGQ G++ ++++ + P + F+ + H
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANH 311
Score = 29.9 bits (64), Expect = 0.47
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 258 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPGN-DPYAFLEF 389
+++ NLDP++ L F G + CK+ + E GN Y F+ F
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHF 215
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 58.4 bits (135), Expect = 1e-09
Identities = 29/88 (32%), Positives = 52/88 (59%)
Frame = +1
Query: 520 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 699
++FVG+L P ++ +L + F+ G++ V + +SKGY FVS+ A+AAI+A
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 700 MNGQWLGSRSIRTNWSTRKPPAKGVNEG 783
MN Q+L ++ I +++ ++ KG G
Sbjct: 160 MNNQFLMNKPITVSYAFKR-EGKGERHG 186
Score = 31.5 bits (68), Expect = 0.15
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 237 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEF 389
D + T+Y+GNLD VT+ L L Q G V I R+ ++ + F EF
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 258 LYVGNLDPSVTEVFLCTLFGQIGD-VKGCKIIREPG--NDPYAFLEFTCHXXXXXXXXXM 428
L+VGNLDP V E L F +G VK ++ R+ + Y F+ + M
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 429 NKRVVLEQ 452
N + ++ +
Sbjct: 161 NNQFLMNK 168
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 57.6 bits (133), Expect = 2e-09
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +1
Query: 478 SPGNQPKTDTSNHHHIFVGDLSPEI--ETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 651
+P + P D N +FV +L I T L E F+ FG I +C + P T SKGY
Sbjct: 409 TPTSTPTIDPCN---LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
Query: 652 FVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 768
FVSF +A AI +NG G + + N++ ++ K
Sbjct: 466 FVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRK 504
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIV--RDPQTLKSKG---YAFVSFVKKADAEA 687
I+VG+L +++ L E F PFG S ++ + ++ SK +AF++F K A+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 688 AIQAMNGQWLGSRSIRTNWS 747
AI ++NG +++ ++
Sbjct: 82 AIASLNGSSFQGNTLKVEYT 101
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/96 (31%), Positives = 52/96 (54%)
Frame = +1
Query: 511 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 690
NH +FVG+L ++ L +AF+ + + ++VRD + K++G+ FVSF A
Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREG-KTRGFGFVSFKDSDQFLKA 86
Query: 691 IQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 798
+ NG+++GSR ++ + +T VNE SK
Sbjct: 87 WREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSK 122
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 55.6 bits (128), Expect = 8e-09
Identities = 29/109 (26%), Positives = 55/109 (50%)
Frame = +1
Query: 436 EWSSNKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 615
E N E P + P+ + + +FV ++ ++ + L++ F+ FG +++ RI+
Sbjct: 74 EVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIM 133
Query: 616 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 762
R+P T S+G+ F+SF +A +AI +N Q R + + R P
Sbjct: 134 REPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRP 182
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 53.6 bits (123), Expect = 3e-08
Identities = 27/90 (30%), Positives = 47/90 (52%)
Frame = +1
Query: 490 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 669
+P D++ +FVG LS ++ L + F +G I R++ D Q+ +SKGY +V F
Sbjct: 254 KPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET 313
Query: 670 KADAEAAIQAMNGQWLGSRSIRTNWSTRKP 759
A+AA+ A + + R + + S +P
Sbjct: 314 PEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343
Score = 50.0 bits (114), Expect = 4e-07
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+FVG+LS + L AF G+I + R+ DPQ+ + KG+ +V+F A+ ++ M
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426
Query: 703 NGQWLGSRSIRTNWST 750
NG ++ R R ++ST
Sbjct: 427 NGHFIAGRPCRLDFST 442
Score = 36.3 bits (80), Expect = 0.005
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 219 R*ANMGDE-SHPK-TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 359
R N GD+ S P T++VGNL + TE L T FG GD++ ++ +P
Sbjct: 353 RAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDP 401
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 52.0 bits (119), Expect = 1e-07
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+FVG++ ++ + E F G + ++V DP+T KGY F F A++ +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 703 NGQWLGSRSIRTNWSTRKP 759
N LG R IR + + P
Sbjct: 69 NNSELGPRKIRVEFPSNDP 87
Score = 32.7 bits (71), Expect = 0.066
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 258 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEF 389
++VGN+ V+E + +F Q+G VK K++ +P Y F EF
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+ VG+L+P + ++L AF PFGEI + + R + + + YAFV F + DA+ A++ M
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMENM 66
Query: 703 NGQWLGSRSIRTN 741
N L R IR +
Sbjct: 67 NYSILCDRCIRVS 79
Score = 34.7 bits (76), Expect = 0.016
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 240 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGND-PYAFLEF 389
E T++VGNL PSVTE L F G++ + R E D YAF+EF
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEF 53
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 49.2 bits (112), Expect = 7e-07
Identities = 31/103 (30%), Positives = 46/103 (44%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+FVG L+ + L+ F PFG I N +I KG FV + +K+ AE AI M
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIP------FGKGCGFVQYSEKSAAEKAINTM 352
Query: 703 NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVI 831
G +G+ IR W P +++ S + FD +
Sbjct: 353 QGALVGTSHIRLAWGHNTLPVSALSQ---SQSQVSDEGFDRTL 392
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +1
Query: 502 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 681
D S+ +I++G+L ++ + + F+ FGE + +VRD +T KSKG+AF+ + +
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 682 EAAIQAMNGQWLGSRSIRTNW-STRKPPAK 768
A+ M L R +R + ++ K P K
Sbjct: 86 VLAVDNMTNVKLLDRLVRVDHVASYKVPQK 115
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 237 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDP-YAFLEF 389
D S +Y+GNLD + E + +F + G+ ++R E G +AFL++
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 47.2 bits (107), Expect = 3e-06
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+FV +L+ + + + L F+ G I + +V +P+T +++GY FV+F DA+ A + +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 703 NGQWLGSRSIRTNWST-RKPPAKGVNEGAPSSKRAKQPTFDEVII 834
+ L R +R +++T RK ++ K +Q +II
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLII 111
Score = 34.7 bits (76), Expect = 0.016
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 696
+FV +L E L F FG ++ ++V+DP T +S G F+ F + D + ++
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
Score = 33.5 bits (73), Expect = 0.038
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 565 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW 744
L F+ FG++ +I + G+AFV + AE A+ ++NG + R I +W
Sbjct: 124 LEPHFSKFGKVREIKIPTKGGG-RMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
Query: 745 STRKPPAKGVN-EGAPSSKRAKQPTFDE 825
+ K + + A S + K+ DE
Sbjct: 183 AVSKDAFEATTLKDASSEEENKEFVSDE 210
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/70 (35%), Positives = 38/70 (54%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+F+ LS + + + + F +G I R+VR+ T KS GYAFV F ++ D + A +A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 703 NGQWLGSRSI 732
G L R I
Sbjct: 162 AGLMLNGRRI 171
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 46.8 bits (106), Expect = 4e-06
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
I+VG+L L + F G + RI +P T +SKG+ V F + DA ++I+ +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Query: 703 NGQWLGSRSIR---TNWSTRKPPAKGVNEGAPS 792
NG G R ++ +++T P V G PS
Sbjct: 341 NGYRYGGRPLQLSYAHYATPLPAVPTVLSGLPS 373
Score = 42.7 bits (96), Expect = 6e-05
Identities = 28/104 (26%), Positives = 47/104 (45%)
Frame = +1
Query: 484 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 663
GN K T ++VG+LS ++ L+E G + NC I+ P L SKG A + +
Sbjct: 56 GNGQKY-TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGL-SKGCAIIEY 113
Query: 664 VKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSS 795
+A AI+ ++ Q R + + G + +PS+
Sbjct: 114 STAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSA 157
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 252 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 359
+ +YVGNL V L GQ+G+V C+I+ P
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP 101
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 258 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 359
+YVGNL + ++ L LF IG V +I EP
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP 315
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 46.0 bits (104), Expect = 7e-06
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+FV L+P + L F+ FG+I +C+++RD +T S YAF+ F K E A M
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 703 NGQWLGSRSIRTNWS 747
+ I ++S
Sbjct: 306 QNVLIDDSRIHVDFS 320
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 258 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGND-PYAFLEF 389
L+V L+P + L +F + G + C++IR E G+ YAF+EF
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 45.2 bits (102), Expect = 1e-05
Identities = 18/47 (38%), Positives = 32/47 (68%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 663
+F+G L+ E + LR+ F FGE+ +C ++RD T +S+G+ F++F
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
Score = 34.3 bits (75), Expect = 0.022
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = +1
Query: 493 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 672
P+ + +FVG + + R F FG + + ++ D T + +G+ FV++ +
Sbjct: 239 PREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE 298
Query: 673 ADAEAAI 693
+ EA +
Sbjct: 299 SAVEATM 305
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/76 (26%), Positives = 43/76 (56%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
++VG++ E+ + + F G + + ++V DP++ + KGY F + A A +A++ +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 703 NGQWLGSRSIRTNWST 750
N G+R +R ++ T
Sbjct: 67 NNYDAGTRRLRVDFPT 82
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 258 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP--YAFLEF 389
+YVGN+ + E + +F Q G VK +++ +P P Y F E+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.0 bits (99), Expect = 3e-05
Identities = 24/71 (33%), Positives = 36/71 (50%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+FVG+L+ E E L F G I RIVRDP+T KG+A++ F + A+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 703 NGQWLGSRSIR 735
+ R++R
Sbjct: 332 EKKMPEGRTLR 342
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 252 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEF 389
+ ++VGNL E L FG G + +I+R+P + +A+++F
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 43.2 bits (97), Expect = 5e-05
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Frame = +1
Query: 463 VNWATSPGNQPKTDTS--NHHHIFVGDLSPEIET--NILREAFAPFGEISNCRIVRDPQT 630
V+W + + P S + +++V +L + T + L + F+PFG I + + P +
Sbjct: 362 VHWDSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNS 421
Query: 631 LKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 756
SKGY FV+F + A A +NG +G + I ++ RK
Sbjct: 422 GISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERK 463
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 43.2 bits (97), Expect = 5e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 517 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 696
H + V ++ + ++ F PFG+I + RD Q +SKG+ ++ + A A++
Sbjct: 340 HRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALE 398
Query: 697 AMNGQWLGSRSIR 735
MNG L R++R
Sbjct: 399 KMNGFDLAGRNMR 411
Score = 39.5 bits (88), Expect = 6e-04
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+FV L+ + + L + F G + + +IVRD + +SKG A+V F + +AAI A+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-AL 300
Query: 703 NGQWL 717
+G+ L
Sbjct: 301 SGKRL 305
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 577 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWL--GSRSIRTNWST 750
F PFG + C I P+T S+ +AFV + DAE A ++G+ L G +R W+
Sbjct: 27 FEPFGPLIRCDIPI-PRTRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAK 85
Query: 751 RKPPA 765
+ PP+
Sbjct: 86 QPPPS 90
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +3
Query: 228 NMGDESHP-KTLYVGNLDPSVTEVFLCTLFG-QIGDVKGCKIIREPGNDPYAFLEF 389
N D++ P T+YVGNL PS +E L LF Q+G + C R GN P F+EF
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLC--FRTKGNGPMCFVEF 470
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +1
Query: 463 VNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI----VRDPQT 630
V+ + N P ++ +FVG LS + + +R F G + I VR
Sbjct: 27 VHASAEQSNTP-AQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTR 85
Query: 631 LKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 732
L G AFV+F + D + AI+ +NG+ L R I
Sbjct: 86 LVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREI 119
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 634 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 732
+ +G+ FVSF D AI+ MNG+ +G ++
Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTL 288
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 40.7 bits (91), Expect = 2e-04
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Frame = +1
Query: 514 HHHIFVGDLSP--EIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 687
++ ++VG ++P +IE + R FA +G+I R+ L S+G AF++++ +A+A+
Sbjct: 173 NYTLYVGGITPTDDIEEIVSRH-FAEWGDIERIRV------LNSRGIAFITYLNEANAQF 225
Query: 688 AIQAMNGQWLG-SRSIRTNWSTRKP-PAKGVNEGAPSSKRA 804
A +AM Q L + W+T P PA +RA
Sbjct: 226 AKEAMAHQSLDHDECLNVRWATTDPNPASQARNQRRLEERA 266
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 249 PKTLYVGNLDP-SVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 389
P +++VG LDP + T L LF + G V CKII + +AFL F
Sbjct: 364 PYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRF 411
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/63 (26%), Positives = 36/63 (57%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
I++ +L + + + E PFG++ + +++++ SKG+ F F +DAE AI +
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 703 NGQ 711
+G+
Sbjct: 372 DGK 374
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.5 bits (88), Expect = 6e-04
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +1
Query: 529 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 708
V +LS + LR+ F FG I + +D +T ++KG+AFVS+ + A A ++G
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
Query: 709 QWLGSRSIRTNWS 747
+ +R +S
Sbjct: 266 YGWNNLILRCEFS 278
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 640 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN-EGAPSSKRA 804
+G AF +F +A+ +Q +NG + R +R W + PPA+ E KRA
Sbjct: 273 RGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERVERGKQEKRA 328
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 666
+FVG+L + L+ F G++ + RI D + + KGYAFV F+
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFI 141
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 36.3 bits (80), Expect = 0.005
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+FVG+L E L+E F G+I R++ T K KG+ FV F A++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289
Query: 703 NGQW 714
+ W
Sbjct: 290 HNSW 293
Score = 29.5 bits (63), Expect = 0.61
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 258 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 350
L+VGNLD T+ L FGQ+G ++ +++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 690
+FV ++SP + + LR F FGE+ + + +P T S G +SF K++ A
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVA 151
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.1 bits (77), Expect = 0.012
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 508 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 687
S +F+ +L+ + L+ F PFG++ + D +T KG+A++ F DA+
Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF---HDADD 376
Query: 688 AIQA 699
A++A
Sbjct: 377 AVRA 380
Score = 31.5 bits (68), Expect = 0.15
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = +1
Query: 622 PQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 798
P S G+ FV F KA A AA+ AMNG L + S + A SSK
Sbjct: 659 PGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSK 717
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/50 (24%), Positives = 29/50 (58%)
Frame = +1
Query: 592 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 741
EI++ + + + + S+ +AF+ F + DA+ AI+ +N ++ + I +
Sbjct: 31 EITDVSVAKTKEGV-SRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVH 79
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.1 bits (77), Expect = 0.012
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +1
Query: 499 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 678
++T+ ++F+G+L + EAF FG+I + +I L K AFV F+ D
Sbjct: 293 SNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI------LSKKNIAFVHFLNIRD 346
Query: 679 AEAAIQAMN 705
A ++ ++
Sbjct: 347 AIKVVRTLS 355
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 35.1 bits (77), Expect = 0.012
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +1
Query: 505 TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAE 684
TS ++++ L P L FG++S+ + + D +T KGY F F ++ A
Sbjct: 292 TSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSAL 351
Query: 685 AAIQAM 702
I AM
Sbjct: 352 ICISAM 357
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.3 bits (75), Expect = 0.022
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = +1
Query: 454 EMKVNWATSPGNQPKT-----DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 618
E+KV W + + + ++F+G+L I + +RE PFG I +IV
Sbjct: 180 EVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVT 239
Query: 619 DPQTLKSKGYAFVSFVKKADAEAAIQ--AMNGQW 714
+ + AFV F+ A A A+Q +N +W
Sbjct: 240 E------RNIAFVHFLNIAAAIKAVQELPLNPKW 267
Score = 33.1 bits (72), Expect = 0.050
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Frame = +1
Query: 448 NKEMKVNWATSPGNQPKTDT-----SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 612
N+ +K+ W G P +I++G+ + L+E F FGEI
Sbjct: 386 NRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNF 445
Query: 613 VRDPQTLKSKGYAFVSFVKKADAEAAI 693
R+ K AFV+F A A AI
Sbjct: 446 FRE------KNCAFVNFTSLASAINAI 466
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +3
Query: 252 KTLYVGNLDPS--VTEVFLCTLFGQI 323
KT+YVGNL P+ + E+ C G I
Sbjct: 115 KTVYVGNLPPNTPIDEILSCVRTGPI 140
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.9 bits (74), Expect = 0.029
Identities = 20/87 (22%), Positives = 43/87 (49%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
++VG++ + L+ FA G ++ I+ D T KG+A++ F + + A+ +
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115
Query: 703 NGQWLGSRSIRTNWSTRKPPAKGVNEG 783
NG L R ++ + ++ G++ G
Sbjct: 116 NGSMLHERPLKV--TPKRTNVPGMSRG 140
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 252 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFT 392
+++YVGN+D SVT L + F G V I+ + G+ +A++EF+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.050
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKS-KGYAFVSF 663
I+VG LS IE++ L F+ FG +SN I+ + + + +A+++F
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 30.7 bits (66), Expect = 0.27
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+F+ +LS +I + + F +G + R +R T++++G AFV + DA A + +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPV---RQIRLGNTVQTRGTAFVVYENVQDARRACEKL 70
Query: 703 NG 708
+G
Sbjct: 71 SG 72
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.9 bits (64), Expect = 0.47
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+FVG + P+ + + F +G+I +C+++ G+ FV DA +
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVNDF 57
Query: 703 NG-QWLGSRSI 732
G +++GSR +
Sbjct: 58 QGKEFMGSRIV 68
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.61
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
++V ++ ++ + F +G++ + RI + + + KG+ +V DAE A+ A
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 703 NGQWLGSR 726
G+ LG+R
Sbjct: 817 -GKQLGNR 823
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 29.5 bits (63), Expect = 0.61
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 520 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 699
++ + +L+P ++ + FGEI NC+ V D Q K A V F A A+ +Q
Sbjct: 101 NVVIENLAPGTSSDDVAATLLNFGEILNCQ-VNDSQ---GKVRASVRFSTLASAQQVVQK 156
Query: 700 MNG 708
++G
Sbjct: 157 LDG 159
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 29.1 bits (62), Expect = 0.81
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 562 ILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 741
IL F +G++ + V+ +TL+ +G AFV F +A A++ + G L + +
Sbjct: 45 ILEHLFGSYGKVID---VQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQ 101
Query: 742 WSTRK 756
+S K
Sbjct: 102 YSKSK 106
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
+F+G ++ + +LR F FG + + + + + + F+ ++ AE A AM
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYR------HGFLKMFRRDAAEKAQVAM 461
Query: 703 NGQWLGSRSIRTNW 744
+IRT W
Sbjct: 462 ENVPFADTTIRTKW 475
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +1
Query: 523 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 702
++VG+LS + F+ GEI + D T G+ FV + + DA +++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 703 NGQWLGSRSIRTN 741
+ L R IR +
Sbjct: 94 SRTSLDERIIRAD 106
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 258 LYVGNLDPSVTEVFLCTLFGQIGDVKG 338
L+V NL V L LF ++GDVKG
Sbjct: 197 LFVTNLPRIVPYATLLELFSKLGDVKG 223
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 588 W*D-IELSHSTRSSNAQIQGLCFCIICKES 674
W D + L T +S ++I G FC +C+E+
Sbjct: 483 WKDMLILKDQTDTSESRITGFYFCCLCREN 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,457,276
Number of Sequences: 5004
Number of extensions: 72529
Number of successful extensions: 262
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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