Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G19
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|...    29   0.64 
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    28   1.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   4.5  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    26   7.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   7.9  

>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
           Med31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 120 VQFFIFSVCVHIVTLFTYIIYYSDIFASIYLKTVETEYDYIIVGSG 257
           V+F I+  C+H++TL     + +DI  +   K V  E  Y  +G G
Sbjct: 63  VKFIIYPTCLHMLTLLKNPQFRNDISRADLSKQVNDEIYYEWLGKG 108


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 198 ASIYLKTVETEYDYIIVGSGTAGSVIAHRI 287
           AS+  +   T +  ++VG G+AG  +AH+I
Sbjct: 18  ASMLARFASTHHKVLVVGGGSAGISVAHQI 47


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = -3

Query: 446  VNYAPASIFLW*CFIVPIINRFM*KGTKN 360
            V++ P ++F++  F+VP ++RF  + T++
Sbjct: 1070 VDFKPYNVFIYTAFVVPRLDRFADENTQS 1098


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +3

Query: 219 VETEYDYIIVGSGTAGSV---IAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFLHKSV 389
           +   +  ++VG  T  S+   + + IA E   TY+   A  +     ++P+L P L   +
Sbjct: 320 LRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHPQMRS--NVPLLPPTLVDQI 377

Query: 390 YDWNYE 407
           Y W  E
Sbjct: 378 YLWELE 383


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 438 IIDHKCRLPQGKIVGGSSKLNNMV 509
           ++D +CRLP G       KLNN +
Sbjct: 510 LLDEECRLPSGNHQSFLQKLNNQL 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,744
Number of Sequences: 5004
Number of extensions: 61992
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)