Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_G19
(859 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 41 0.001
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 36 0.041
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 35 0.072
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 34 0.17
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 33 0.29
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 32 0.67
10_08_0628 + 19389508-19389637,19389774-19389850,19390332-193904... 32 0.67
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 32 0.67
03_06_0546 - 34646946-34647289,34647542-34647608 29 3.6
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332... 29 4.7
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 40.7 bits (91), Expect = 0.001
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = +3
Query: 198 ASIYLKTVETEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFL 377
AS + + YDYIIVG GTAG +A ++ + Y ++LE G +G +I L F
Sbjct: 39 ASSFSRIQHEAYDYIIVGGGTAGCPLAATLSQK--YKVLLLERGGSPYGNRNISHLENF- 95
Query: 378 HKSVYDWNYETSPQEN--ACWGIIDHKCRLPQGKIVGGSSKLNNMVHVRGNIS 530
H + D + SP + + G+I+ + K++GG + +N + R + S
Sbjct: 96 HICLAD-DSPNSPSQGFISTDGVIN-----ARAKVLGGGTSVNAGFYSRADPS 142
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 35.9 bits (79), Expect = 0.041
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 231 YDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPF 374
YDYI+VG GTAG +A ++ + Y ++LE G +G ++ + F
Sbjct: 51 YDYIVVGGGTAGCPLAATLSLK--YKVLLLERGGSPYGNRNVSYMENF 96
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 35.1 bits (77), Expect = 0.072
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +3
Query: 222 ETEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAG 329
E YDYI+VG GTAG +A +A +VLE G
Sbjct: 52 EEAYDYIVVGGGTAGCPLAATLAGPGGGRVLVLERG 87
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 33.9 bits (74), Expect = 0.17
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Frame = +3
Query: 231 YDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFLHKSVYDWNYET 410
Y+YI+VG GTAG +A ++ + ++LE G +G ++ S H + D +T
Sbjct: 57 YNYIVVGGGTAGCPLAATLSERSR--VLLLERGGLPYGNRNV---SSEYHFA--DALADT 109
Query: 411 SPQENACWGIIDHKCRLPQGKIVGGSSKLNNMVHVRGNISHY--AVWFHRKYSNDY 572
SP+ A + + + +++GG S LN + R + + A W R + Y
Sbjct: 110 SPRSPAQRFVSEDGVVNARARVLGGGSCLNAGFYTRASSGYVRAAGWDPRLVNASY 165
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 33.1 bits (72), Expect = 0.29
Identities = 27/98 (27%), Positives = 46/98 (46%)
Frame = +3
Query: 231 YDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFLHKSVYDWNYET 410
YDYIIVG GTAG +A ++ + ++LE G + I ++ F D +T
Sbjct: 49 YDYIIVGGGTAGCPLAATLS--QRFRVLLLERGGSPYDDERIGNMTRFA-----DTLSDT 101
Query: 411 SPQENACWGIIDHKCRLPQGKIVGGSSKLNNMVHVRGN 524
SP A + + + +++GG S +N + R +
Sbjct: 102 SPSSPAQRFVSEDGVINSRPRVLGGGSCINAGFYTRAS 139
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 31.9 bits (69), Expect = 0.67
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Frame = +3
Query: 225 TEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFLHKSVYDWNY 404
+ Y+YI++G GTAG +A ++ + ++LE G +P + + D
Sbjct: 52 SSYNYIVIGGGTAGCPLAATLSEHSR--VLLLERGG-------LPYANMSSEQHFTDALA 102
Query: 405 ETSPQENACWGIIDHKCRLPQGKIVGGSSKLNNMVHVRGNISHYAV--WFHRKYSNDY 572
+TSP A I + + +++GG S LN + R + + W R ++ Y
Sbjct: 103 DTSPASPAQRFISEDGVVNARARVLGGGSCLNAGFYTRASNEYVRASGWDARLVNSSY 160
>10_08_0628 +
19389508-19389637,19389774-19389850,19390332-19390438,
19390545-19390626,19390702-19390814,19391023-19391086,
19391192-19391266,19391691-19391807,19392131-19392199,
19392319-19392411,19392733-19392835,19393040-19393164,
19393317-19393366,19393477-19393543,19393663-19393742,
19394038-19394166,19394274-19394340,19394429-19394512
Length = 543
Score = 31.9 bits (69), Expect = 0.67
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +3
Query: 231 YDYIIVGSGTAGSVIAHRIA-----TETNYTYIVLEAGSK-GHGLLDIPVLSP-FLHKSV 389
YD ++VG+G AG A R+ +T+ + VLE GS+ G +L V P L + +
Sbjct: 3 YDVVVVGAGPAGLAAAIRLKQLCRDADTDLSVCVLEKGSEVGAHVLSGNVFEPRALDELI 62
Query: 390 YDWNYETSP 416
W E +P
Sbjct: 63 PKWRQEDTP 71
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 31.9 bits (69), Expect = 0.67
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 231 YDYIIVGSGTAGSVIAHRIATETNYTYIVLEAG 329
YDYII+G GTAG +A ++ Y ++LE G
Sbjct: 43 YDYIIIGGGTAGCPLAATLS--ERYRVLLLERG 73
>03_06_0546 - 34646946-34647289,34647542-34647608
Length = 136
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2
Query: 525 CCLGHVPCYLIWMIPQLFCLEGVCIYGQLCPSKHFP 418
CC V C L+ CL C G++ S H P
Sbjct: 48 CCAAGVMCVLLGFFAHCHCLYSCCYRGKMRDSFHLP 83
>11_06_0148 +
20631949-20632338,20632838-20633044,20633168-20633267,
20633478-20633560,20633656-20633712,20633790-20633942,
20634016-20634094,20634279-20634427,20634541-20634675,
20634783-20634896,20635065-20635175,20635338-20635373,
20635675-20635884
Length = 607
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +3
Query: 228 EYDYIIVGSGTAGSVIAHRIATETNYTYI----VLEAGSKGH 341
EYD I+VGSG G V A ++A + + V+ GS G+
Sbjct: 68 EYDAIVVGSGIGGMVAATQLAAKGARVLVLEKYVIPGGSSGY 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,046,630
Number of Sequences: 37544
Number of extensions: 353912
Number of successful extensions: 672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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