Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G19
         (859 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   5e-13
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)               29   3.7  
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   8.5  
SB_11783| Best HMM Match : C4 (HMM E-Value=1)                          28   8.5  
SB_3920| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 38/109 (34%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
 Frame = +3

Query: 225 TEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGH-GLLDIPVLSPF-LHKSVYDW 398
           +E+DY+I G+G+AG V+A+R++ + +   ++LEAG K     + +P    + L    Y+W
Sbjct: 162 SEHDYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNW 221

Query: 399 NYETSPQENACWGIIDHKCRLPQGKIVGGSSKLNNMVHVRGNISHYAVW 545
            Y T+PQ++    + +     P+G++ GGSS LN MV++RG+   Y  W
Sbjct: 222 YYHTAPQKH----MNNRVMYCPRGRVWGGSSSLNAMVYIRGHAYDYDRW 266


>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +3

Query: 228 EYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGL-LDIP 359
           +YD+II G GTAG ++A+R+  +  +  ++LEAG +   + + IP
Sbjct: 10  DYDFIIAGGGTAGCILANRLTADGRHRVLMLEAGHEARSMWISIP 54


>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
          Length = 394

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +3

Query: 231 YDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFLHKSVYDWNYET 410
           YDY+++G G+ G   A R A E     +V+E    G   +++  +    H      + + 
Sbjct: 51  YDYVVIGGGSGGIASARR-AAEFGVKAVVIEHARLGGTCVNVGCVPKKAHVDFVAGHAQF 109

Query: 411 SPQEN 425
           +P  N
Sbjct: 110 TPDGN 114


>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
 Frame = +3

Query: 156  VTLFTYIIYYSDIF-ASIYLKTVETEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGS 332
            +TL   I + SD    +IY  ++ET  +  I  +       A R   ++ Y ++  +   
Sbjct: 1814 ITLSGLITFVSDWKRGNIYKLSIETNVELNITVAEEIKKPTAIRYYNQSRYNFVESQCSQ 1873

Query: 333  KGHGLLDIPVLSPFLHKSVYDWNYETSPQENAC 431
               G  D+ +L P             SP E  C
Sbjct: 1874 NNGGCSDLCLLRPHSRTCACATGVPLSPDEKTC 1906


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 75   VFKISTNIKMNFSYCVQFF-IFSVCVHIVTLFTYIIYYSDIFASIYL 212
            VF ++      FS  + F  +FSV +  +T+F+ II +  +F+ I L
Sbjct: 1151 VFSVTILFITVFSVTILFITVFSVIILFITVFSVIILFITVFSIIIL 1197


>SB_11783| Best HMM Match : C4 (HMM E-Value=1)
          Length = 565

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 382 NRFMIGTMKHHHRKMLAGA 438
           N+ + G +K HH++MLAGA
Sbjct: 368 NKLVSGQLKKHHQRMLAGA 386


>SB_3920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 234 DYIIVGSGTAGSVIAHRI-ATETNYTYIVLEAGSKGHGLLD 353
           D ++VG+GT+G   A+ I   + +   +VLEA  +  G LD
Sbjct: 258 DVVVVGAGTSGLCSAYEILKAQKDCKVVVLEAKGRVGGRLD 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,635,368
Number of Sequences: 59808
Number of extensions: 430440
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)