Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G18
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   3.6  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   6.3  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    26   6.3  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   6.3  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = +1

Query: 340  KYQISWTEEPAKARSGVHQINILDEEGWASLRRARRADPAASVAPLLAIQLSHPGSYSGP 519
            +Y +   E P    + V ++N  D+    SL  A    P    APL+    + P +YS  
Sbjct: 1296 RYGLKLVEAPIHEIAAVGELNPFDQVSIISL--ALDPPPIPERAPLV----NDPVNYSKN 1349

Query: 520  WVNSEILATFISIL 561
            W N +IL  F  IL
Sbjct: 1350 WWNVKILEHFDFIL 1363


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 211 RXVTQIAYITEFTLKCDNTLPENYGLYAEVDGKSL 315
           + V  + Y+TEF+     T P ++GL   +DG SL
Sbjct: 368 KVVFDLKYVTEFS-----TSPNDFGLIPVIDGSSL 397


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 430 LRRARRADPAAS--VAPLLAIQLSHPGSYSGPWVNSEILATFISILGRLYGT 579
           L R+RR DP  +  +  L A+QLSH  +Y  P     I AT +++ G L  T
Sbjct: 719 LPRSRRDDPYWTDLLERLKAVQLSHQNNYREP-----IRATRLALAGALPST 765


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 540 QYLGVHPWPGVAARMTKLYGE 478
           ++   HPWPG   R T+ Y E
Sbjct: 278 KFFAQHPWPGTRHRETREYTE 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,412
Number of Sequences: 5004
Number of extensions: 50689
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)