Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G18
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical...    69   5e-12
Z48544-7|CAA88440.1|  249|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    29   4.5  

>AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical
           protein Y56A3A.21 protein.
          Length = 159

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
 Frame = +1

Query: 232 YITEFTLKCDNTLPENYGLYAEVDGKSLTAARIGEN-KYQISWTEEPAKARSGVHQINIL 408
           +ITEFTL+C N  P+N    AEV+G+ +  +   E  K+Q+SWT E   A +    INI 
Sbjct: 42  FITEFTLQCSNN-PKNIQYTAEVNGRLIPVSISDETAKFQVSWTLEHKDAGAQTFNINIF 100

Query: 409 DEEGWASLRRARRADPAASVAPLLAIQLSHPGSYSGPWVNSEILATFISILGRLY 573
           DEEG A   +    +P     PL  +Q SH G  +   ++SE +A  I ++G  Y
Sbjct: 101 DEEGAAQYAK----NPVTK--PLFTVQQSHGGLATKSPISSETVAVIIVVIGLYY 149


>Z48544-7|CAA88440.1|  249|Caenorhabditis elegans Hypothetical
           protein ZK945.7 protein.
          Length = 249

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 611 LLKLISCSCYEVPYRRPKIEMNVASISEFT 522
           L+ ++  S Y +P     + MNVAS SE+T
Sbjct: 103 LMNVLDYSVYSMPPSEANVTMNVASFSEYT 132


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 256 CDNTLPENYGLYAEVDGKSLTAARIG 333
           CD  LPE+YGL   VDG       IG
Sbjct: 516 CDQCLPEHYGLSEHVDGCKACDCDIG 541


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,107,232
Number of Sequences: 27780
Number of extensions: 285364
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)