Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G16
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar...   112   5e-26
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.5  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    27   4.7  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   8.2  

>SPBC21H7.06c |||inositol metabolism protein Opi10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score =  112 bits (270), Expect = 5e-26
 Identities = 70/202 (34%), Positives = 102/202 (50%), Gaps = 12/202 (5%)
 Frame = +2

Query: 50  CLGRLVHTDFSPIAETRFLTTITEADSINHVAVFLTGAVPLPPGTAAMVYWSWPDPAAPP 229
           C GRLV T+   +A+ +F+  +  A+S+NH+ VFL    P P G  A VY+ WP      
Sbjct: 6   CAGRLVQTNLQQVADNQFVFQLDSAESLNHIVVFLLPNSPFPVGMGAKVYFQWPGKP--- 62

Query: 230 NWQLLGHISNIKPSAIFKISNLKKLHELTNENKFMGTFGQQQICHNAQIGISIEPEAN-- 403
            +Q LG+++N KPSAIF++ N   +  L+     +G          A +GIS+EP  N  
Sbjct: 63  -FQFLGYLTNEKPSAIFRLKN--TIQTLSENENCVGI--------TAMLGISVEPLTNFT 111

Query: 404 ----VQLLASSVALQETNNYVTFAQKMLENLVNFVASFSVTQDQMTP------TPGVSYI 553
               V   AS+V  +      + AQK+L NL NF+ASF+ +Q            P  ++I
Sbjct: 112 ETPAVSTSASNVIAKPLPPVTSVAQKILTNLYNFLASFATSQLPPNSIGLGDLRPNDTFI 171

Query: 554 PLNTLHTWYQNFERRLQQNPNF 619
           PL     W+  F  +L  NPNF
Sbjct: 172 PLRVFQDWHAKFLNKLSNNPNF 193


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +2

Query: 167 PLPPGTAAMVYWSWPDPAAPPN-WQLLGHISNIKPSAIFKISNLKKLHELTNENKFMGTF 343
           P PP T    Y   PD ++ PN +   G  SNI P+    ++ ++    L        T 
Sbjct: 137 PYPPATFENNYSVLPDHSSQPNAYSFTG--SNILPTQSPSLNQMQDYQNLQQNGSSNTTI 194

Query: 344 GQQQICHNAQIGISIEPEAN 403
                 H+   G++ +P  N
Sbjct: 195 PSFSSQHDLSQGLTHQPVPN 214


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 314 TNENKFMGTFGQQQICHNAQIGISIEPEA--NVQLLASSVALQETNNYVTFAQ 466
           T + KF+ T G  Q+    Q+G   EP++  N Q   + +A+ E N + T ++
Sbjct: 22  TRDGKFLLTVGSNQVIRKFQVGSDEEPDSIDNHQDPITGIAVAE-NYFCTCSE 73


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 472 HFLSKCHIVVCFLECNR*SQ*LHIGFRLNRYSYLCIVTYLLLSKC 338
           H ++  HI  C   CN         + L+    +C+ ++L LSKC
Sbjct: 42  HLMTSQHIFKCLSSCN---------YALSILHNICLASFLYLSKC 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,338
Number of Sequences: 5004
Number of extensions: 61579
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)