Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G16
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576...    29   6.5  
09_02_0181 - 5425833-5426527,5426667-5429397                           29   6.5  
02_02_0433 - 10178497-10178844,10180394-10180444,10181201-101812...    28   8.6  

>12_01_0676 +
           5765154-5765241,5765329-5765453,5765533-5765604,
           5765728-5765802,5765880-5765905,5766709-5766870,
           5766963-5767037,5767133-5767204,5767289-5767363,
           5767461-5767529,5767839-5767910,5768030-5768161,
           5768430-5768920,5769315-5769476,5769570-5769709,
           5769818-5770037,5770398-5770633,5771560-5772051
          Length = 927

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 242 LGHISNIKPSAIFKISNLKKLHELTNENKFMGT 340
           +  +S   PS IF  SN+K +H L + NKF G+
Sbjct: 187 INQLSGSIPSQIFN-SNMKLIHLLLDNNKFSGS 218


>09_02_0181 - 5425833-5426527,5426667-5429397
          Length = 1141

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +2

Query: 461 AQKMLENLVNFVASFSVTQDQMTPTPGVSYIPLNTLHTWYQNFERRLQQNPNFWKN 628
           +QK+LE   +++A  SV  DQ +P P V  IP+   H    + +  L++  ++ KN
Sbjct: 115 SQKLLEVKEHYIADMSVVGDQPSPEP-VQKIPIPCDHV--MDNDNNLREALDYIKN 167


>02_02_0433 -
           10178497-10178844,10180394-10180444,10181201-10181263,
           10181427-10181471,10181772-10181816,10183894-10183923,
           10184182-10184289,10186459-10186524,10186595-10186624,
           10187147-10187501,10189323-10189345,10191421-10191447,
           10192131-10192210,10192367-10192550
          Length = 484

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +1

Query: 109 HNHRSRQHQPCSSISDRSCTSTTWNSSNGLLELA*PSRTS*LAATWSH 252
           H H +   Q  SS      TSTT   SNG+LE +  + TS   A W+H
Sbjct: 183 HPHHNALQQQASSPRSSCITSTTSLGSNGVLEFS--NNTSPREA-WNH 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,201,489
Number of Sequences: 37544
Number of extensions: 396181
Number of successful extensions: 993
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)