Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G16
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038613-4|AAB92052.3|  162|Caenorhabditis elegans Hypothetical ...    66   2e-11
Z66495-9|CAH19100.1|  670|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z66495-8|CAA91274.1|  680|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF038613-4|AAB92052.3|  162|Caenorhabditis elegans Hypothetical
           protein F42A6.6 protein.
          Length = 162

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 18/126 (14%)
 Frame = +2

Query: 83  PIAETRFLTTITEADSINHVAVFLTGAVPLPPGTAA----------------MVYWSWPD 214
           P+++T F   I  AD+INHV VFLTGA P P G                    VY  WP 
Sbjct: 19  PVSDTEFTCEIVNADAINHVVVFLTGAQPFPDGIGGSGDHFQNFPPKKTQFISVYIRWPT 78

Query: 215 PAAPPNWQLLGHISNIKPSAIFKISNLKKLHELTNENKFMGTFGQQQI--CHNAQIGISI 388
                NW  LG I N KPSAI+K++   +LH+    + F     Q Q+    +AQIGI+ 
Sbjct: 79  QDG-GNWHYLGFICNEKPSAIYKVA---QLHKSDASHSFSQFDNQMQLYSSGSAQIGINA 134

Query: 389 EPEANV 406
           E  +++
Sbjct: 135 ESLSDI 140


>Z66495-9|CAH19100.1|  670|Caenorhabditis elegans Hypothetical
           protein C36A4.9b protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 86  IAETRFLTTITEADSINHVAVFLTGAVPLPPGTAAMVYW 202
           ++    + T  + ++  H+   L GA P+ PG AAM ++
Sbjct: 425 LSNVSIVDTYWQTETGGHMITCLPGATPMKPGAAAMPFF 463


>Z66495-8|CAA91274.1|  680|Caenorhabditis elegans Hypothetical
           protein C36A4.9a protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 86  IAETRFLTTITEADSINHVAVFLTGAVPLPPGTAAMVYW 202
           ++    + T  + ++  H+   L GA P+ PG AAM ++
Sbjct: 435 LSNVSIVDTYWQTETGGHMITCLPGATPMKPGAAAMPFF 473


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,610,449
Number of Sequences: 27780
Number of extensions: 355688
Number of successful extensions: 808
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)