Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_G13
(925 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 28 0.30
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z68106-3|CAA92127.1| 74|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.7
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 29 4.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.2
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 8.2
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 28 8.2
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 8.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.2
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 8.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.2
AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical... 28 8.2
AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical... 28 8.2
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 27.9 bits (59), Expect(2) = 0.30
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 874 PPPPXPPPXVLXPP 915
PPPP PPP + PP
Sbjct: 86 PPPPPPPPTLKAPP 99
Score = 23.8 bits (49), Expect(2) = 0.30
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 862 LXXXPPPPXPPP 897
L PPPP PPP
Sbjct: 80 LQQAPPPPPPPP 91
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 923 CXXGGXNTXGGGXGGGGXXXRNPPP 849
C GG GGG GGG PPP
Sbjct: 92 CGGGGGGCGGGGGCGGGCAPPPPPP 116
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = -1
Query: 487 GXGXXXGGGXXG---PPPPXPXXXXXXXXXXGGXXFXXXGGG 371
G G GGG G PPPP P GG GGG
Sbjct: 96 GGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGG 137
>Z68106-3|CAA92127.1| 74|Caenorhabditis elegans Hypothetical
protein F41E7.4 protein.
Length = 74
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -2
Query: 915 GGGQHXXGGXXGGGAXXKKPPPXFXXXVGXXKXTXXXXXXPRG 787
GGG GG G A + PPP F G + T RG
Sbjct: 32 GGGGGFGGGGFGRPAPFRPPPPRFGPSFGRPQTTIVKQTIIRG 74
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 914 GGXNTXGGGXGGGGXXXRNPPPXF 843
GG N G G G GG N PP F
Sbjct: 50 GGFNNYGNGGGFGGNNYNNGPPPF 73
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -1
Query: 529 GXXPPPXGXFXXKXGXGXXXGG-GXXGPPPP 440
G PPP G G GG G GPPPP
Sbjct: 408 GYGPPPPGGPGAPGSYGPPQGGPGGFGPPPP 438
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 850 GGGFLXXXPPPPXPPP 897
GGG+ PPPP PPP
Sbjct: 58 GGGYGCGIPPPPPPPP 73
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/80 (23%), Positives = 21/80 (26%)
Frame = +3
Query: 360 KXGXPPPXXKKXXPPXXXXXXKXXXGXGGGGPXXPPPXXXPXPXFXXKXPXGGGXXPXXX 539
+ G PPP PP G P PPP P P GG P
Sbjct: 268 RTGSPPPPPTGSPPPPPAGGSPPPPR--AGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 325
Query: 540 XXKXXGAPLXXKXXXXXXPP 599
P + PP
Sbjct: 326 TGSPPPPPRQKRQAPERSPP 345
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/80 (23%), Positives = 21/80 (26%)
Frame = +3
Query: 360 KXGXPPPXXKKXXPPXXXXXXKXXXGXGGGGPXXPPPXXXPXPXFXXKXPXGGGXXPXXX 539
+ G PPP PP G P PPP P P GG P
Sbjct: 289 RTGSPPPPPTGSPPPPPAGGSPPPPR--AGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 346
Query: 540 XXKXXGAPLXXKXXXXXXPP 599
P + PP
Sbjct: 347 TGSPPPPPRQKRQAPERSPP 366
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/80 (23%), Positives = 21/80 (26%)
Frame = +3
Query: 360 KXGXPPPXXKKXXPPXXXXXXKXXXGXGGGGPXXPPPXXXPXPXFXXKXPXGGGXXPXXX 539
+ G PPP PP G P PPP P P GG P
Sbjct: 274 RTGSPPPPPTGSPPPPPAGGSPPPPR--AGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 331
Query: 540 XXKXXGAPLXXKXXXXXXPP 599
P + PP
Sbjct: 332 TGSPPPPPRQKRQAPERSPP 351
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 851 GGGFFXXAPPPXXPPXXCXPP 913
GGG APPP PP C P
Sbjct: 23 GGGGCGCAPPPPPPPCGCGAP 43
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -1
Query: 529 GXXPPPXGXFXXKXGXGXXXGGGXXGPPPPXPXXXXXXXXXXGGXXFXXXGGG 371
G PPP G G GGG PPP P GG GGG
Sbjct: 47 GCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAP---CGGGCGGGGGGCGGGGGG 96
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = -1
Query: 520 PPPXGXFXXKXGXGXXXGGGXXGPPPPXPXXXXXXXXXXGGXXFXXXGGG 371
P P G G G GGG PP P GG GGG
Sbjct: 52 PAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGG 101
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -1
Query: 529 GXXPPPXGXFXXKXGXGXXXGGGXXGPPPPXPXXXXXXXXXXGGXXFXXXGGG 371
G PPP G G GGG PPP P GG GGG
Sbjct: 47 GCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAP---CGGGCGGGGGGCGGGGGG 96
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = -1
Query: 520 PPPXGXFXXKXGXGXXXGGGXXGPPPPXPXXXXXXXXXXGGXXFXXXGGG 371
P P G G G GGG PP P GG GGG
Sbjct: 52 PAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGG 101
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 851 GGGFFXXAPPPXXPPXXCXPP 913
GGG APPP PP C P
Sbjct: 23 GGGGCGCAPPPPPPPCGCGAP 43
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 875 PPPXXPPXXCXPPP 916
PPP PP C PPP
Sbjct: 47 PPPICPPQFCPPPP 60
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 874 PPPPXPPPXVLXPP 915
PPPP PPP + PP
Sbjct: 63 PPPPPPPPPPMCPP 76
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 874 PPPPXPPPXVLXPP 915
PPPP PPP + PP
Sbjct: 64 PPPPPPPPPMCPPP 77
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 875 PPPXXPPXXCXPPP 916
PPP PP C PPP
Sbjct: 65 PPPPPPPPMCPPPP 78
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 875 PPPXXPPXXCXPPP 916
PPP PP C PPP
Sbjct: 759 PPPPPPPGGCPPPP 772
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 875 PPPXXPPXXCXPPP 916
PPP PP C PPP
Sbjct: 759 PPPPPPPGGCPPPP 772
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 875 PPPXXPPXXCXPPP 916
PPP PP C PPP
Sbjct: 72 PPPPPPPMPCPPPP 85
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 875 PPPXXPPXXCXPPP 916
PPP PP C PPP
Sbjct: 342 PPPPPPPGGCPPPP 355
>AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15a protein.
Length = 933
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 874 PPPPXPPPXVLXPPXXQ 924
PPPP PPP +L P Q
Sbjct: 791 PPPPPPPPPMLPPQQSQ 807
>AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15b protein.
Length = 832
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 874 PPPPXPPPXVLXPPXXQ 924
PPPP PPP +L P Q
Sbjct: 690 PPPPPPPPPMLPPQQSQ 706
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,190,170
Number of Sequences: 27780
Number of extensions: 244473
Number of successful extensions: 2518
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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