Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_G12
(900 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L24804-1|AAA18537.1| 160|Homo sapiens p23 protein. 73 1e-12
BC003005-1|AAH03005.1| 160|Homo sapiens prostaglandin E synthas... 73 1e-12
BC058912-1|AAH58912.1| 362|Homo sapiens protein tyrosine phosph... 59 2e-08
BC047685-1|AAH47685.1| 362|Homo sapiens protein tyrosine phosph... 59 2e-08
BC035508-1|AAH35508.1| 361|Homo sapiens PTPLAD1 protein protein. 59 2e-08
AK074898-1|BAC11277.1| 362|Homo sapiens protein ( Homo sapiens ... 59 2e-08
AK027421-1|BAB55101.1| 362|Homo sapiens protein ( Homo sapiens ... 59 2e-08
AJ271091-1|CAB69070.1| 370|Homo sapiens B-ind1 protein protein. 59 2e-08
BC019324-1|AAH19324.1| 525|Homo sapiens alanyl-tRNA synthetase ... 40 0.012
BC004172-1|AAH04172.1| 525|Homo sapiens alanyl-tRNA synthetase ... 40 0.012
>L24804-1|AAA18537.1| 160|Homo sapiens p23 protein.
Length = 160
Score = 72.9 bits (171), Expect = 1e-12
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Frame = +2
Query: 197 PPPVLWAQRKEDVFLTFSVE-TKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPE 373
P W R++ VF+ F VE +KD + EK + F G DN H I L+ + P
Sbjct: 3 PASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPN 62
Query: 374 KSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKWXXXXXXXXXXXS-YD 550
S R + LRK ++ G WP LTK++ K ++L +DFN W S +D
Sbjct: 63 DSKHKRTDRSILCCLRKGES-GQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFD 121
Query: 551 -FEQMLQNFGG 580
F +M+ N GG
Sbjct: 122 RFSEMMNNMGG 132
>BC003005-1|AAH03005.1| 160|Homo sapiens prostaglandin E synthase 3
(cytosolic) protein.
Length = 160
Score = 72.9 bits (171), Expect = 1e-12
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Frame = +2
Query: 197 PPPVLWAQRKEDVFLTFSVE-TKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPE 373
P W R++ VF+ F VE +KD + EK + F G DN H I L+ + P
Sbjct: 3 PASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPN 62
Query: 374 KSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKWXXXXXXXXXXXS-YD 550
S R + LRK ++ G WP LTK++ K ++L +DFN W S +D
Sbjct: 63 DSKHKRTDRSILCCLRKGES-GQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFD 121
Query: 551 -FEQMLQNFGG 580
F +M+ N GG
Sbjct: 122 RFSEMMNNMGG 132
>BC058912-1|AAH58912.1| 362|Homo sapiens protein tyrosine
phosphatase-like A domain containing 1 protein.
Length = 362
Score = 59.3 bits (137), Expect = 2e-08
Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = +2
Query: 200 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYFR--GEGAPDNRLHEVTIALYDTVLP 370
P V WAQR +++L + + ++P I I ++ ++F+ G GA + ++E + D V P
Sbjct: 8 PHVYWAQRHRELYLRVELSDVQNPAISITENVLHFKAQGHGAKGDNVYEFHLEFLDLVKP 67
Query: 371 EKSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 508
E V+ R V + ++K+ + +W LTK +K+P +L DF++W
Sbjct: 68 EP-VYKLTQRQVNITVQKKVSQ--WWERLTKQEKRPLFLAPDFDRW 110
>BC047685-1|AAH47685.1| 362|Homo sapiens protein tyrosine
phosphatase-like A domain containing 1 protein.
Length = 362
Score = 59.3 bits (137), Expect = 2e-08
Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = +2
Query: 200 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYFR--GEGAPDNRLHEVTIALYDTVLP 370
P V WAQR +++L + + ++P I I ++ ++F+ G GA + ++E + D V P
Sbjct: 8 PHVYWAQRHRELYLRVELSDVQNPAISITENVLHFKAQGHGAKGDNVYEFHLEFLDLVKP 67
Query: 371 EKSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 508
E V+ R V + ++K+ + +W LTK +K+P +L DF++W
Sbjct: 68 EP-VYKLTQRQVNITVQKKVSQ--WWERLTKQEKRPLFLAPDFDRW 110
>BC035508-1|AAH35508.1| 361|Homo sapiens PTPLAD1 protein protein.
Length = 361
Score = 59.3 bits (137), Expect = 2e-08
Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = +2
Query: 200 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYFR--GEGAPDNRLHEVTIALYDTVLP 370
P V WAQR +++L + + ++P I I ++ ++F+ G GA + ++E + D V P
Sbjct: 8 PHVYWAQRHRELYLRVELSDVQNPAISITENVLHFKAQGHGAKGDNVYEFHLEFLDLVKP 67
Query: 371 EKSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 508
E V+ R V + ++K+ + +W LTK +K+P +L DF++W
Sbjct: 68 EP-VYKLTQRQVNITVQKKVSQ--WWERLTKQEKRPLFLAPDFDRW 110
>AK074898-1|BAC11277.1| 362|Homo sapiens protein ( Homo sapiens
cDNA FLJ90417 fis, clone NT2RP3000171, weakly similar to
Mus musculus partial mRNA for B-IND1 protein (B-ind1
gene). ).
Length = 362
Score = 59.3 bits (137), Expect = 2e-08
Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = +2
Query: 200 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYFR--GEGAPDNRLHEVTIALYDTVLP 370
P V WAQR +++L + + ++P I I ++ ++F+ G GA + ++E + D V P
Sbjct: 8 PHVYWAQRHRELYLRVELSDVQNPAISITENVLHFKAQGHGAKGDNVYEFHLEFLDLVKP 67
Query: 371 EKSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 508
E V+ R V + ++K+ + +W LTK +K+P +L DF++W
Sbjct: 68 EP-VYKLTQRQVNITVQKKVSQ--WWERLTKQEKRPLFLAPDFDRW 110
>AK027421-1|BAB55101.1| 362|Homo sapiens protein ( Homo sapiens
cDNA FLJ14515 fis, clone NT2RM1000800, weakly similar to
Mus musculus partial mRNA for B-IND1 protein. ).
Length = 362
Score = 59.3 bits (137), Expect = 2e-08
Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = +2
Query: 200 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYFR--GEGAPDNRLHEVTIALYDTVLP 370
P V WAQR +++L + + ++P I I ++ ++F+ G GA + ++E + D V P
Sbjct: 8 PHVYWAQRHRELYLRVELSDVQNPAISITENVLHFKAQGHGAKGDNVYEFHLKFLDLVKP 67
Query: 371 EKSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 508
E V+ R V + ++K+ + +W LTK +K+P +L DF++W
Sbjct: 68 EP-VYKLTQRQVNITVQKKVSQ--WWERLTKQEKRPLFLAPDFDRW 110
>AJ271091-1|CAB69070.1| 370|Homo sapiens B-ind1 protein protein.
Length = 370
Score = 59.3 bits (137), Expect = 2e-08
Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = +2
Query: 200 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYFR--GEGAPDNRLHEVTIALYDTVLP 370
P V WAQR +++L + + ++P I I ++ ++F+ G GA + ++E + D V P
Sbjct: 8 PHVYWAQRHRELYLRVELSDVQNPAISITENVLHFKAQGHGAKGDNVYEFHLEFLDLVKP 67
Query: 371 EKSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 508
E V+ R V + ++K+ + +W LTK +K+P +L DF++W
Sbjct: 68 EP-VYKLTQRQVNITVQKKVSQ--WWERLTKQEKRPLFLAPDFDRW 110
>BC019324-1|AAH19324.1| 525|Homo sapiens alanyl-tRNA synthetase
domain containing 1 protein.
Length = 525
Score = 39.9 bits (89), Expect = 0.012
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +2
Query: 239 LTFSVE-TKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCVEMI 415
+ F VE + D + IE + F + A L+ I Y V + S R +
Sbjct: 1 MEFCVEDSTDVHVLIEDHRIVFSCKNADGVELYN-EIEFYAKVNSKDSQDKRSSRSITCF 59
Query: 416 LRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 508
+RK K + WP LTK+ KP +L +DF+ W
Sbjct: 60 VRKWK-EKVAWPRLTKEDIKPVWLSVDFDNW 89
>BC004172-1|AAH04172.1| 525|Homo sapiens alanyl-tRNA synthetase
domain containing 1 protein.
Length = 525
Score = 39.9 bits (89), Expect = 0.012
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +2
Query: 239 LTFSVE-TKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCVEMI 415
+ F VE + D + IE + F + A L+ I Y V + S R +
Sbjct: 1 MEFCVEDSTDVHVLIEDHRIVFSCKNADGVELYN-EIEFYAKVNSKDSQDKRSSRSITCF 59
Query: 416 LRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 508
+RK K + WP LTK+ KP +L +DF+ W
Sbjct: 60 VRKWK-EKVAWPRLTKEDIKPVWLSVDFDNW 89
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,591,716
Number of Sequences: 237096
Number of extensions: 2113693
Number of successful extensions: 5321
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5312
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -