Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G12
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical pr...    69   3e-12
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    32   0.64 
U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated p...    31   1.5  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    31   1.5  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    31   1.5  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    31   1.5  
Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.     30   2.6  
AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.     30   2.6  
Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.       29   4.5  
U64600-1|AAK39203.1|  500|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical
           protein ZC395.10 protein.
          Length = 175

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
 Frame = +2

Query: 200 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEK 376
           P VLWAQR+  V+LT  V E K   +K E + ++F+G    D   +E T+  +D + P  
Sbjct: 5   PTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKTDK--YEATLEFFDEIDPAS 62

Query: 377 SVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKWXXXXXXXXXXXS---- 544
                    V  I  ++KT   +WP L ++K K H+LK+DF KW           +    
Sbjct: 63  VKHTGSSTRVVEITVQKKTPA-WWPRLLQNKGKVHWLKVDFGKWKDEDEDDEAEDAGAGI 121

Query: 545 -------YDFEQMLQNFGGAGG 589
                  +D  Q +   GGAGG
Sbjct: 122 GGGMANGFDLNQYMSQMGGAGG 143


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 647 HHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNH--MNYFLQLHHPHHSIC*NQFS 486
           HHQ    SH     + S + +Q  Q +G++ RN+   N   Q ++P++ +  N  S
Sbjct: 390 HHQHHQQSHDQNSTISSVEYNQYQQKAGSYGRNYHPYNNHHQQYNPYNQVLENSSS 445


>U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated
           protein 2, isoform d protein.
          Length = 286

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/71 (25%), Positives = 27/71 (38%)
 Frame = -2

Query: 638 SQFPSHQTKVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSIC*NQFSGNAAFSCLL 459
           S  P+H    + PS+ +  L+ S G       +Y     H HH     Q      +S   
Sbjct: 145 STMPTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSP 203

Query: 458 LASARMDHLFF 426
           L S R  H ++
Sbjct: 204 LISPRSSHSYY 214


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/71 (25%), Positives = 27/71 (38%)
 Frame = -2

Query: 638  SQFPSHQTKVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSIC*NQFSGNAAFSCLL 459
            S  P+H    + PS+ +  L+ S G       +Y     H HH     Q      +S   
Sbjct: 1785 STMPTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSP 1843

Query: 458  LASARMDHLFF 426
            L S R  H ++
Sbjct: 1844 LISPRSSHSYY 1854


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/71 (25%), Positives = 27/71 (38%)
 Frame = -2

Query: 638  SQFPSHQTKVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSIC*NQFSGNAAFSCLL 459
            S  P+H    + PS+ +  L+ S G       +Y     H HH     Q      +S   
Sbjct: 1886 STMPTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSP 1944

Query: 458  LASARMDHLFF 426
            L S R  H ++
Sbjct: 1945 LISPRSSHSYY 1955


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/71 (25%), Positives = 27/71 (38%)
 Frame = -2

Query: 638  SQFPSHQTKVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSIC*NQFSGNAAFSCLL 459
            S  P+H    + PS+ +  L+ S G       +Y     H HH     Q      +S   
Sbjct: 1886 STMPTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSP 1944

Query: 458  LASARMDHLFF 426
            L S R  H ++
Sbjct: 1945 LISPRSSHSYY 1955


>Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical
           protein C32A3.1b protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 659 QVNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM 543
           Q    HQ Q   HQ    +P+    Q+H    A+  +HM
Sbjct: 420 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 458


>Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical
           protein C32A3.1a protein.
          Length = 490

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 659 QVNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM 543
           Q    HQ Q   HQ    +P+    Q+H    A+  +HM
Sbjct: 442 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 480


>AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 659 QVNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM 543
           Q    HQ Q   HQ    +P+    Q+H    A+  +HM
Sbjct: 420 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 458


>AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.
          Length = 490

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 659 QVNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM 543
           Q    HQ Q   HQ    +P+    Q+H    A+  +HM
Sbjct: 442 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 480


>Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC518.3c protein.
          Length = 597

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = +3

Query: 501 TNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMT 677
           TNGM R+ ++     + S + +R   EL + GR  KNL    W+LT +  ++L  N +T
Sbjct: 35  TNGMSRVHRVLTEDEIASGRSTRW-TELEIHGR-VKNLSPSLWQLTHLSALFLNNNGLT 91


>Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical
           protein ZC518.3b protein.
          Length = 613

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = +3

Query: 501 TNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMT 677
           TNGM R+ ++     + S + +R   EL + GR  KNL    W+LT +  ++L  N +T
Sbjct: 51  TNGMSRVHRVLTEDEIASGRSTRW-TELEIHGR-VKNLSPSLWQLTHLSALFLNNNGLT 107


>Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical
           protein ZC518.3a protein.
          Length = 606

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = +3

Query: 501 TNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMT 677
           TNGM R+ ++     + S + +R   EL + GR  KNL    W+LT +  ++L  N +T
Sbjct: 44  TNGMSRVHRVLTEDEIASGRSTRW-TELEIHGR-VKNLSPSLWQLTHLSALFLNNNGLT 100


>AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.
          Length = 606

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = +3

Query: 501 TNGMMRMMKLKKIIHMISSKCSRTLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMT 677
           TNGM R+ ++     + S + +R   EL + GR  KNL    W+LT +  ++L  N +T
Sbjct: 44  TNGMSRVHRVLTEDEIASGRSTRW-TELEIHGR-VKNLSPSLWQLTHLSALFLNNNGLT 100


>U64600-1|AAK39203.1|  500|Caenorhabditis elegans Hypothetical
           protein C33D12.2 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 290 SVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFV 388
           +V+F G+ +  N  HE+TI     V+P K+V V
Sbjct: 16  TVFFSGKSSEKNVCHEITIKHNVVVVPNKNVRV 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,829,597
Number of Sequences: 27780
Number of extensions: 335274
Number of successful extensions: 941
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)