Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_G10
(936 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 38 0.014
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 38 0.014
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.042
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.042
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.042
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.51
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.51
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 32 0.51
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 31 1.2
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 30 2.7
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.6
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 4.8
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.8
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 29 4.8
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 6.3
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 6.3
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 8.3
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 8.3
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 8.3
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 8.3
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 8.3
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 8.3
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 28 8.3
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 37.5 bits (83), Expect = 0.014
Identities = 25/88 (28%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Frame = +1
Query: 532 PGXKKXPXPXXXGXXFXXPXPXPPPXGPXPP-XGGWXXPFXPRXGGXXXXXXMGXXPXKT 708
PG P P + P P PP P PP G P P G M P
Sbjct: 281 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 340
Query: 709 L*XPGXXXXPKTXXXPLXXVVXPXPPPP 792
+ PG P P PPPP
Sbjct: 341 MRYPGGMPPPPPPRYPSAGPGMYPPPPP 368
Score = 31.5 bits (68), Expect = 0.90
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +1
Query: 517 GGXGXPGXKKXPXPXXXGXXFXXPXPXPPPXGPXPPXGGWXXPFXPR 657
G G PG P P G P PPP G P GG P PR
Sbjct: 309 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP-GGMPPPPPPR 354
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 37.5 bits (83), Expect = 0.014
Identities = 25/88 (28%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Frame = +1
Query: 532 PGXKKXPXPXXXGXXFXXPXPXPPPXGPXPP-XGGWXXPFXPRXGGXXXXXXMGXXPXKT 708
PG P P + P P PP P PP G P P G M P
Sbjct: 291 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 350
Query: 709 L*XPGXXXXPKTXXXPLXXVVXPXPPPP 792
+ PG P P PPPP
Sbjct: 351 MRYPGGMPPPPPPRYPSAGPGMYPPPPP 378
Score = 31.5 bits (68), Expect = 0.90
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +1
Query: 517 GGXGXPGXKKXPXPXXXGXXFXXPXPXPPPXGPXPPXGGWXXPFXPR 657
G G PG P P G P PPP G P GG P PR
Sbjct: 319 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP-GGMPPPPPPR 364
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.9 bits (79), Expect = 0.042
Identities = 27/93 (29%), Positives = 28/93 (30%)
Frame = +1
Query: 514 GGGXGXPGXKKXPXPXXXGXXFXXPXPXPPPXGPXPPXGGWXXPFXPRXGGXXXXXXMGX 693
GG P P P P PPP G PP G P P GG +
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPP-PPPPGG---LPPISG 756
Query: 694 XPXKTL*XPGXXXXPKTXXXPLXXVVXPXPPPP 792
P PG P P P PPPP
Sbjct: 757 GPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 561 PGGGXFFXXGXTPPPPPPG 505
PGG G PPPPPPG
Sbjct: 748 PGGLPPISGGPPPPPPPPG 766
Score = 25.0 bits (52), Expect(2) = 0.83
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 561 PGGGXFFXXGXTPPPPPP 508
P GG G PPPPPP
Sbjct: 747 PPGGLPPISGGPPPPPPP 764
Score = 25.0 bits (52), Expect(2) = 0.83
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 534 GXTPPPPPPG 505
G PPPPPPG
Sbjct: 782 GGPPPPPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.9 bits (79), Expect = 0.042
Identities = 27/93 (29%), Positives = 28/93 (30%)
Frame = +1
Query: 514 GGGXGXPGXKKXPXPXXXGXXFXXPXPXPPPXGPXPPXGGWXXPFXPRXGGXXXXXXMGX 693
GG P P P P PPP G PP G P P GG +
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPP-PPPPGG---LPPISG 756
Query: 694 XPXKTL*XPGXXXXPKTXXXPLXXVVXPXPPPP 792
P PG P P P PPPP
Sbjct: 757 GPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 561 PGGGXFFXXGXTPPPPPPG 505
PGG G PPPPPPG
Sbjct: 748 PGGLPPISGGPPPPPPPPG 766
Score = 25.0 bits (52), Expect(2) = 0.83
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 561 PGGGXFFXXGXTPPPPPP 508
P GG G PPPPPP
Sbjct: 747 PPGGLPPISGGPPPPPPP 764
Score = 25.0 bits (52), Expect(2) = 0.83
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 534 GXTPPPPPPG 505
G PPPPPPG
Sbjct: 782 GGPPPPPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.9 bits (79), Expect = 0.042
Identities = 27/93 (29%), Positives = 28/93 (30%)
Frame = +1
Query: 514 GGGXGXPGXKKXPXPXXXGXXFXXPXPXPPPXGPXPPXGGWXXPFXPRXGGXXXXXXMGX 693
GG P P P P PPP G PP G P P GG +
Sbjct: 284 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPP-PPPPGG---LPPISG 339
Query: 694 XPXKTL*XPGXXXXPKTXXXPLXXVVXPXPPPP 792
P PG P P P PPPP
Sbjct: 340 GPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 561 PGGGXFFXXGXTPPPPPPG 505
PGG G PPPPPPG
Sbjct: 331 PGGLPPISGGPPPPPPPPG 349
Score = 25.0 bits (52), Expect(2) = 0.85
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 561 PGGGXFFXXGXTPPPPPP 508
P GG G PPPPPP
Sbjct: 330 PPGGLPPISGGPPPPPPP 347
Score = 25.0 bits (52), Expect(2) = 0.85
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 534 GXTPPPPPPG 505
G PPPPPPG
Sbjct: 365 GGPPPPPPPG 374
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.3 bits (70), Expect = 0.51
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = -2
Query: 653 GXNGXXQPPXGGXG-PXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPPPP 510
G +G GG G GGG G G G G + P PPPP
Sbjct: 258 GSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -1
Query: 621 GXWAXWRGXXXGXXKXXXXXPGGGXFFXXGXTPPPPPP 508
G +A G G GGG + PPPPPP
Sbjct: 270 GGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPP 307
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 514 GGGXGXPGXKKXPXPXXXGXXFXXPXPXPPPXGPXPP 624
GGG G G G + P PPP P PP
Sbjct: 274 GGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPPP 310
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.3 bits (70), Expect = 0.51
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = -2
Query: 653 GXNGXXQPPXGGXG-PXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPPPP 510
G +G GG G GGG G G G G + P PPPP
Sbjct: 258 GSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -1
Query: 621 GXWAXWRGXXXGXXKXXXXXPGGGXFFXXGXTPPPPPP 508
G +A G G GGG + PPPPPP
Sbjct: 270 GGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPP 307
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 514 GGGXGXPGXKKXPXPXXXGXXFXXPXPXPPPXGPXPP 624
GGG G G G + P PPP P PP
Sbjct: 274 GGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPPP 310
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 32.3 bits (70), Expect = 0.51
Identities = 28/96 (29%), Positives = 29/96 (30%), Gaps = 1/96 (1%)
Frame = -2
Query: 794 PGGGGXGXTTXXRGXXXVLGQXXXPGX*RVXXGXXPIXXXXXXPPXRGXNGXXQPPXGGX 615
PG G G G PG G PP R Q P G
Sbjct: 212 PGSAGPKGNAGPAGPPGPPGYPGRPGE-TGDHGKTIAGEAPPGPPGRQGEMGPQGPPGPP 270
Query: 614 GPXGGGXGXGXXKXXPXXXG-XGXFFXPGXPXPPPP 510
GP G G G K P G G + PG P P P
Sbjct: 271 GPR-GKDGAGGEKGAPGDQGNPGPYGKPGQPGAPGP 305
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -2
Query: 623 GGXGPXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPPPP 510
GG G GGG G G G G + G P PPPP
Sbjct: 35 GGCG-GGGGCGGGCGYGGGGGCGYGGGYGCGIPPPPPP 71
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = -2
Query: 623 GGXGPXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPPPP 510
GG G GGG G G G G P P PPPP
Sbjct: 38 GGGGGCGGGCGYGGGGGCGYGGGYGCGIPP--PPPPPP 73
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -2
Query: 632 PPXGGXGPXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPPPP 510
PP GP GGG G G G F P PPPP
Sbjct: 181 PPSNDFGPGGGGGGMGGGGGSGGSGGGSGRF----PPPPPP 217
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -2
Query: 629 PXGGXGPXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPPP 513
P GG G GGG G G G G P PPP
Sbjct: 21 PSGGGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPP 59
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/72 (26%), Positives = 21/72 (29%)
Frame = +2
Query: 587 PXXXPRQXAQXPQXGVGGNRXIPXXGGKXXXXKWGEXXXKPFXXQGPXXXPKPXXPPXXG 766
P P P G G+ P G + G P P PP G
Sbjct: 237 PPPPPPPKGSPPLAG-SGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 295
Query: 767 XXXQXPPPRGXP 802
PPPRG P
Sbjct: 296 SPPPPPPPRGSP 307
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/72 (26%), Positives = 21/72 (29%)
Frame = +2
Query: 587 PXXXPRQXAQXPQXGVGGNRXIPXXGGKXXXXKWGEXXXKPFXXQGPXXXPKPXXPPXXG 766
P P P G G+ P G + G P P PP G
Sbjct: 258 PPPPPPPKGSPPLAG-SGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 316
Query: 767 XXXQXPPPRGXP 802
PPPRG P
Sbjct: 317 SPPPPPPPRGSP 328
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/72 (26%), Positives = 21/72 (29%)
Frame = +2
Query: 587 PXXXPRQXAQXPQXGVGGNRXIPXXGGKXXXXKWGEXXXKPFXXQGPXXXPKPXXPPXXG 766
P P P G G+ P G + G P P PP G
Sbjct: 243 PPPPPPPKGSPPLAG-SGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 301
Query: 767 XXXQXPPPRGXP 802
PPPRG P
Sbjct: 302 SPPPPPPPRGSP 313
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 517 GGXGXPGXKKXPXPXXXGXXFXXPXPXPPPXGPXPPXG 630
G G PG ++ P P + P PP G PP G
Sbjct: 716 GPPGPPGPQQHPGPYPGYPGYGPPGAMRPPAGFAPPPG 753
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Frame = -2
Query: 665 PPXRGXNGXXQPPXGGXG-PXGGGXGXGXXKXXPXXXGXGXFFXP--GXP---XPPPP 510
PP G G PP G P G G G P G + P G P PPPP
Sbjct: 381 PPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPP 438
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = -2
Query: 665 PPXRGXNGXXQPPXGGXGPXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPPPP 510
P RG +G PP G G GGG P G G P PPP
Sbjct: 361 PYWRGGSGG--PPSIGGGVGGGGAPLAPTGRDPYSVGESWANGAGGPGGPPP 410
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +1
Query: 532 PGXKKXPXPXXXGXXFXXPXPXPPPXGPXPPXGGWXXPFXPRXGG 666
PG ++ P P G P PP G GG P P G
Sbjct: 774 PGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPG 818
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +1
Query: 532 PGXKKXPXPXXXGXXFXXPXPXPPPXGPXPPXGGWXXPFXPRXGG 666
PG ++ P P G P PP G GG P P G
Sbjct: 774 PGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPG 818
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = -2
Query: 665 PPXRGXNGXXQPPXGGXGPXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPPPP 510
PP G G + P GG GG G G P G G G PPP
Sbjct: 155 PPLMGGGGDPRGPPGG---MGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPP 203
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = -2
Query: 665 PPXRGXNGXXQPPXGGXGPXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPPPP 510
PP G G + P GG GG G G P G G G PPP
Sbjct: 435 PPLMGGGGDPRGPPGG---MGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPP 483
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 620 GXGPXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPP 516
G GP G G G G + G G P P PP
Sbjct: 615 GGGPGGPGGGGGPPRGPGGGGGGGPTGPPAPPKPP 649
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -2
Query: 614 GPXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPPPP 510
G G G G P G G F P P PP P
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGGFMPPPPPPPPMP 683
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -2
Query: 614 GPXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPPPP 510
G G G G P G G F P P PP P
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGGFMPPPPPPPPMP 683
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 620 GXGPXGGGXGXGXXKXXPXXXGXGXFFXPGXPXPP 516
G GP G G G G + G G P P PP
Sbjct: 615 GGGPGGPGGGGGPPRGPGGGGGGGPTGPPAPPKPP 649
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 629 PXGGXGPXGGGXGXGXXKXXPXXXGXGXFFXPGXPXP 519
P GG GP G G P G G PG P P
Sbjct: 182 PAGGPGPAGPPGPAGADGNTPSGGGEGPAGPPGPPGP 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,161,759
Number of Sequences: 27780
Number of extensions: 240770
Number of successful extensions: 2281
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2017
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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