Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G07
         (958 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    43   0.010
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    38   0.38 
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    34   4.7  
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    34   6.2  
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    34   6.2  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 43.2 bits (97), Expect = 0.010
 Identities = 25/36 (69%), Positives = 26/36 (72%)
 Frame = +1

Query: 586 RPCWRXSIGSAPLTSITKIDAQXXRWAKPDXDYKDT 693
           R C R SIGSAPLTSITKIDAQ  R  +   DYKDT
Sbjct: 12  RRC-RFSIGSAPLTSITKIDAQ-VRGGETRQDYKDT 45


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 37.9 bits (84), Expect = 0.38
 Identities = 21/32 (65%), Positives = 22/32 (68%)
 Frame = +1

Query: 598 RXSIGSAPLTSITKIDAQXXRWAKPDXDYKDT 693
           R SIGSAPLTSITK DAQ     +   DYKDT
Sbjct: 51  RFSIGSAPLTSITKSDAQ-ISGGETRQDYKDT 81


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 34.3 bits (75), Expect = 4.7
 Identities = 21/39 (53%), Positives = 22/39 (56%)
 Frame = -3

Query: 632 MLVRGAEPMXKRQQGRPFYGSXPXAGLLLTCSFRRXPXI 516
           MLVRGAEPM KR +        P    LLTCSFR  P I
Sbjct: 1   MLVRGAEPMEKRLR----CWLLPVLCFLLTCSFRLYPLI 35


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 33.9 bits (74), Expect = 6.2
 Identities = 19/31 (61%), Positives = 20/31 (64%)
 Frame = +1

Query: 598 RXSIGSAPLTSITKIDAQXXRWAKPDXDYKD 690
           R SIGSAPLTSI K DAQ     +   DYKD
Sbjct: 83  RFSIGSAPLTSIAKSDAQ-ISGGETRQDYKD 112


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 33.9 bits (74), Expect = 6.2
 Identities = 17/25 (68%), Positives = 17/25 (68%)
 Frame = -2

Query: 435 VSRGXGXAPXTQTASPRAXADSXMQ 361
           V R    AP TQTASPRA ADS MQ
Sbjct: 324 VKRKTTLAPNTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,186,315
Number of Sequences: 1657284
Number of extensions: 5893868
Number of successful extensions: 9499
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9409
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88590537959
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)