Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G05
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    33   0.077
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    33   0.077
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    27   2.9  

>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 32.7 bits (71), Expect = 0.077
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
 Frame = +2

Query: 344 LQIYTWMDATLRELTGLVKEV----NPETRRKGTYFDFAIVYPDMRXPTYRMREIGVTC- 508
           +Q+Y W+  TL EL  L+ +     N ETR          ++ D        R++G  C 
Sbjct: 50  IQVYGWLTMTLYELGVLIADQLLLNNEETRHSEWSLQIRTIFYDKYKDRPIARDLGTVCL 109

Query: 509 SGQRGGDDNKTLSQLKXQIGNYLDISI 589
              +    NK L +   + G+ +D++I
Sbjct: 110 HNPKLFQGNKLLKRTGIKCGDKIDVTI 136


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 32.7 bits (71), Expect = 0.077
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 465 ISGYTMAKSKYVPFRLVSGLTSFTSPVSS 379
           +SGYT   S +VP+ L+S   SFT+  SS
Sbjct: 92  MSGYTFGSSNFVPYNLLSNTPSFTTSHSS 120


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 523 SSLSGTCNSYFP-HTICRGTHIRIHNGKIKVCAFPSRLRINFFYKSC 386
           S L+G+C+ YFP  TI +G  +   + KI +      L    +  SC
Sbjct: 267 SQLNGSCSQYFPLCTISQGDDLWASSAKINLAIESFTLPTRVYGSSC 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,632
Number of Sequences: 5004
Number of extensions: 31898
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)