Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G05
         (941 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0167 - 1159231-1159263,1159348-1159419,1159957-1160052,116...    93   4e-19
06_02_0051 - 10957857-10958127,10959791-10960035,10960160-109602...    28   9.4  

>02_01_0167 -
           1159231-1159263,1159348-1159419,1159957-1160052,
           1160248-1160358,1160768-1160800,1160963-1161076
          Length = 152

 Score = 92.7 bits (220), Expect = 4e-19
 Identities = 48/92 (52%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
 Frame = +2

Query: 317 VRGNVPHNELQIYTWMDATLRELTGLVKEVNPETRRKGTYFDFAIVYPDMRXPTYRMREI 496
           VRG  P +E+QIYTW DATLRELT LVKEV    R++     FA VYPD +   + ++E+
Sbjct: 61  VRGKEPKDEVQIYTWKDATLRELTDLVKEVALAARKRNARLSFAFVYPD-KHGRFVVKEV 119

Query: 497 GVTCS-GQRGGDDNKTLSQLKXQIGNYLDISI 589
           G T S G   GDD KTL++L  QIG+YL ++I
Sbjct: 120 GSTFSYGHGRGDDAKTLAELGFQIGDYLSVAI 151


>06_02_0051 -
           10957857-10958127,10959791-10960035,10960160-10960229,
           10960319-10960986
          Length = 417

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 368 ATLRELTGLVKEVNPETRRKGTYFDFAIV-YPDMRXPTYRMRE 493
           A LRE++G ++  +   + K   FD ++   PD   P  R+RE
Sbjct: 93  ARLREISGTIRSRHGRVQTKAVVFDLSLASTPDGDQPLRRLRE 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,398,892
Number of Sequences: 37544
Number of extensions: 198912
Number of successful extensions: 420
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)