Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G03
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    24   1.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    24   1.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   8.8  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 771 GRCRQECRNPXAPPVCIAV 715
           GRC++ C N    P+CI +
Sbjct: 48  GRCQRFCPNVVPKPLCIKI 66


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 771 GRCRQECRNPXAPPVCIAV 715
           GRC++ C N    P+CI +
Sbjct: 48  GRCQRFCPNVVPKPLCIKI 66


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 592 PRAATPINMFLFNVQVNN 645
           P   TP N +LFN+ V++
Sbjct: 62  PSMQTPTNYYLFNLAVSD 79


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 18/65 (27%), Positives = 22/65 (33%)
 Frame = +3

Query: 273 TTQGLPYPVAQSVPYPVAQSAPYPVAQNAPYPTTQGAPYPTTHGAPYPVHHGVGGYSMAP 452
           T Q  P    QS         P P    +P    +G+P   + G P       GG   AP
Sbjct: 2   TQQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPP------PGGPPGAP 55

Query: 453 PPGRP 467
           P   P
Sbjct: 56  PSQNP 60


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 729 VCIAVSLLSPRLHTARLYLLHHSSTFVLIIY 637
           V ++V LLS  ++ + L  +  +  F LIIY
Sbjct: 184 VTLSVQLLSCEVNGSTLVYIGDNEGFALIIY 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,004
Number of Sequences: 438
Number of extensions: 6041
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)