Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G02
         (834 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    65   2e-09
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    58   4e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    54   6e-06
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    40   0.058
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    40   0.077
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    38   0.23 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.31 
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    33   8.8  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 64.9 bits (151), Expect = 2e-09
 Identities = 30/38 (78%), Positives = 30/38 (78%)
 Frame = -1

Query: 774 PFAGLLLTCSFMRYPLILWITVLPPLSELIPLAAAERP 661
           P    LLTCSF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 57.6 bits (133), Expect = 4e-07
 Identities = 37/75 (49%), Positives = 41/75 (54%)
 Frame = +1

Query: 610 VCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITHERTCEQKASKRPGTVK 789
           +C  G +PLPRSLTR ARSFGCGERY+LT            +   R    K   RP    
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLTD------GDGNFLEDTRKTLSKEEIRP---- 79

Query: 790 RXRCWRFSIGSAPLT 834
             R  RFSIGSAPLT
Sbjct: 80  --RRSRFSIGSAPLT 92


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 53.6 bits (123), Expect = 6e-06
 Identities = 30/55 (54%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +1

Query: 574 CINESANARGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGI 735
           CI + A AR  AV VL ALPL RS TRC RS GCG      +  R YG PQ QG+
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGM 320


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 40.3 bits (90), Expect = 0.058
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 693 HSKAVIRLSTESGDNA*KNM 752
           HSKAVIRLSTESGDNA KNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 39.9 bits (89), Expect = 0.077
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +1

Query: 376 DPXMIRYIDEFGQTTTXMQ 432
           DP MIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.3 bits (85), Expect = 0.23
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 572 SALMNRPTRGXRRFAYW 622
           +ALMNRPTRG RRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.9 bits (84), Expect = 0.31
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -2

Query: 644 ERGSGRAPNTQTAXPRALADSLMQ 573
           +R +  APNTQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 33.1 bits (72), Expect = 8.8
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -1

Query: 783 GSWPFAGLLLTCSFMRYP---LILWITVLPPLSELIPLAAAERP 661
           G W  +G  L    +++    LI+W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,372,820
Number of Sequences: 1657284
Number of extensions: 12282640
Number of successful extensions: 30143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30137
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72553824147
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)