Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G01
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...    82   1e-16
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...    82   1e-16
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...    82   1e-16
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    31   0.21 
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   2.6  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   2.6  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   7.9  

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = +3

Query: 267 VSPVLYTKRPAAFSKCSSXNVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 440
           +S ++Y +  A   K    NVIRDAVTYTEHAKRKTVT++DVVY+LKRQGRT+YGFGG
Sbjct: 47  ISALVYEETRAVL-KLFLENVIRDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIYGFGG 103



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 30/34 (88%), Positives = 32/34 (94%)
 Frame = +2

Query: 218 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFL 319
           ITKPAIRRLARRGGVKRIS L+YEETR VLK+FL
Sbjct: 30  ITKPAIRRLARRGGVKRISALVYEETRAVLKLFL 63


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = +3

Query: 267 VSPVLYTKRPAAFSKCSSXNVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 440
           +S ++Y +  A   K    NVIRDAVTYTEHAKRKTVT++DVVY+LKRQGRT+YGFGG
Sbjct: 47  ISALVYEETRAVL-KLFLENVIRDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIYGFGG 103



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 30/34 (88%), Positives = 32/34 (94%)
 Frame = +2

Query: 218 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFL 319
           ITKPAIRRLARRGGVKRIS L+YEETR VLK+FL
Sbjct: 30  ITKPAIRRLARRGGVKRISALVYEETRAVLKLFL 63


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = +3

Query: 267 VSPVLYTKRPAAFSKCSSXNVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 440
           +S ++Y +  A   K    NVIRDAVTYTEHAKRKTVT++DVVY+LKRQGRT+YGFGG
Sbjct: 47  ISALVYEETRAVL-KLFLENVIRDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIYGFGG 103



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 30/34 (88%), Positives = 32/34 (94%)
 Frame = +2

Query: 218 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFL 319
           ITKPAIRRLARRGGVKRIS L+YEETR VLK+FL
Sbjct: 30  ITKPAIRRLARRGGVKRISALVYEETRAVLKLFL 63


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 327 VIRDAVTYTEHAKRKTVTAMDVVYALKRQ 413
           +  D   + +HA RKT+   DVV  +KRQ
Sbjct: 422 IANDLSAFADHAHRKTIDTQDVVLLMKRQ 450


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 173 ALNVTGRCCVITSRXITKPAIRRLARRGGVKRISGLIYEETRGVLKV 313
           AL  TGR CVI ++  ++  +R L +R     IS L+Y E +   +V
Sbjct: 91  ALWATGRTCVIFNQIWSQQVVRVLVKR---LNISDLLYHEYKPKFEV 134


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 397 YTTSIAVTVFLLACSVYVTASRITFXEEHFENAAGLFVYKTGDTFHSTS 251
           Y+T +A+T    A    ++A  + F    F  A G+ +  T  TF+ TS
Sbjct: 158 YSTFVAITKTFTAEGANISAIYLVFWGFLFAFAVGMSIVMTAFTFYHTS 206


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 294 PAAFSKCSSXNVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 416
           P   S+      I D+ T T+  KRK V    ++Y   R+G
Sbjct: 137 PKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKG 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,439
Number of Sequences: 5004
Number of extensions: 46598
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)