Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_G01
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           80   3e-17
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   4.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.4  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 79.8 bits (188), Expect = 3e-17
 Identities = 37/39 (94%), Positives = 37/39 (94%)
 Frame = +3

Query: 324 NVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 440
           NVIRDAVTYTEH KRKTVTAMDVVYALK QGRTLYGFGG
Sbjct: 65  NVIRDAVTYTEHTKRKTVTAMDVVYALKIQGRTLYGFGG 103



 Score = 70.5 bits (165), Expect = 2e-14
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +2

Query: 218 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFL 319
           ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFL
Sbjct: 30  ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFL 63


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 398 VHNIHSGDGLPLGVFG 351
           VHN+H   G+  G+FG
Sbjct: 331 VHNLHGMPGILGGIFG 346


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 235 PSFGSQRWSETYLRSYIRRDPR 300
           PS   + W+E +L + +R DP+
Sbjct: 22  PSVMLKIWTEEFLSTILRLDPK 43


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 186 VTFSAPLSKTFASFTATGH---LDELLGLCFVLVVAA 85
           +T +  +S T A+     +   +D  LG CFV+V A+
Sbjct: 261 LTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFAS 297


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 186 VTFSAPLSKTFASFTATGH---LDELLGLCFVLVVAA 85
           +T +  +S T A+     +   +D  LG CFV+V A+
Sbjct: 261 LTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFAS 297


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 186 VTFSAPLSKTFASFTATGH---LDELLGLCFVLVVAA 85
           +T +  +S T A+     +   +D  LG CFV+V A+
Sbjct: 200 LTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFAS 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,493
Number of Sequences: 438
Number of extensions: 3128
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)