Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F24
         (901 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   5.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   5.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   5.7  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.9  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.9  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 129 GVAAFVSHKDSKKIVYFETNKKNCSKCQNL 40
           G+ A ++  DS+K+  F T    C+K ++L
Sbjct: 206 GIQALIN--DSRKVTRFPTELTFCNKIKHL 233


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 310 SHRKKYNIYSCF*CAKF 360
           S  K YNI++C  CA F
Sbjct: 45  SSGKHYNIFACDGCAGF 61


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 310 SHRKKYNIYSCF*CAKF 360
           S  K YNI++C  CA F
Sbjct: 45  SSGKHYNIFACDGCAGF 61


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 756 VPXIYTASGNTVR 794
           +P +YT S NT+R
Sbjct: 74  LPGLYTKSANTIR 86


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +2

Query: 425 LTIEERVPLKIQAFYNITPRLMPSSP----HYIVEEEFSVNPWAMLIATIFLNKTSGKT 589
           L I E +    Q  YN+   LM S P    +Y +    +++P       IFLN T  KT
Sbjct: 274 LVINESIIDLSQQTYNV--HLMWSKPDLIPNYYIAHFINIDPENHNKTEIFLNITGDKT 330


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,207
Number of Sequences: 336
Number of extensions: 4503
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)