Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_F24
(901 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR450305-1|CAG29301.1| 574|Homo sapiens MBD4 protein. 89 2e-17
BC011752-1|AAH11752.1| 574|Homo sapiens MBD4 protein protein. 89 2e-17
AM180876-1|CAJ55826.1| 262|Homo sapiens putative methyl-CpG bin... 89 2e-17
AF494057-1|AAM00008.1| 580|Homo sapiens methyl-CpG binding doma... 89 2e-17
AF120999-1|AAD50374.1| 580|Homo sapiens methyl-CpG binding prot... 89 2e-17
AF114784-1|AAD22195.1| 580|Homo sapiens methyl-CpG binding endo... 89 2e-17
AF072250-1|AAC68879.1| 580|Homo sapiens methyl-CpG binding prot... 89 2e-17
AF532602-1|AAP97338.1| 540|Homo sapiens methyl-CpG binding doma... 71 6e-12
>CR450305-1|CAG29301.1| 574|Homo sapiens MBD4 protein.
Length = 574
Score = 89.4 bits (212), Expect = 2e-17
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Frame = +2
Query: 419 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 598
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 414 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 470
Query: 599 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRAXDLYG 775
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 471 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 530
Query: 776 IGKYGEDAYXXFCL 817
IGKYG D+Y FC+
Sbjct: 531 IGKYGNDSYRIFCV 544
>BC011752-1|AAH11752.1| 574|Homo sapiens MBD4 protein protein.
Length = 574
Score = 89.4 bits (212), Expect = 2e-17
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Frame = +2
Query: 419 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 598
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 414 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 470
Query: 599 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRAXDLYG 775
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 471 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 530
Query: 776 IGKYGEDAYXXFCL 817
IGKYG D+Y FC+
Sbjct: 531 IGKYGNDSYRIFCV 544
>AM180876-1|CAJ55826.1| 262|Homo sapiens putative methyl-CpG
binding protein protein.
Length = 262
Score = 89.4 bits (212), Expect = 2e-17
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Frame = +2
Query: 419 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 598
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 102 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 158
Query: 599 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRAXDLYG 775
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 159 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 218
Query: 776 IGKYGEDAYXXFCL 817
IGKYG D+Y FC+
Sbjct: 219 IGKYGNDSYRIFCV 232
>AF494057-1|AAM00008.1| 580|Homo sapiens methyl-CpG binding domain
protein 4 protein.
Length = 580
Score = 89.4 bits (212), Expect = 2e-17
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Frame = +2
Query: 419 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 598
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 420 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 476
Query: 599 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRAXDLYG 775
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 477 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 536
Query: 776 IGKYGEDAYXXFCL 817
IGKYG D+Y FC+
Sbjct: 537 IGKYGNDSYRIFCV 550
>AF120999-1|AAD50374.1| 580|Homo sapiens methyl-CpG binding protein
4 protein.
Length = 580
Score = 89.4 bits (212), Expect = 2e-17
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Frame = +2
Query: 419 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 598
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 420 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 476
Query: 599 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRAXDLYG 775
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 477 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 536
Query: 776 IGKYGEDAYXXFCL 817
IGKYG D+Y FC+
Sbjct: 537 IGKYGNDSYRIFCV 550
>AF114784-1|AAD22195.1| 580|Homo sapiens methyl-CpG binding
endonuclease protein.
Length = 580
Score = 89.4 bits (212), Expect = 2e-17
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Frame = +2
Query: 419 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 598
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 420 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 476
Query: 599 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRAXDLYG 775
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 477 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 536
Query: 776 IGKYGEDAYXXFCL 817
IGKYG D+Y FC+
Sbjct: 537 IGKYGNDSYRIFCV 550
>AF072250-1|AAC68879.1| 580|Homo sapiens methyl-CpG binding protein
MBD4 protein.
Length = 580
Score = 89.4 bits (212), Expect = 2e-17
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Frame = +2
Query: 419 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 598
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 420 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 476
Query: 599 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRAXDLYG 775
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 477 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 536
Query: 776 IGKYGEDAYXXFCL 817
IGKYG D+Y FC+
Sbjct: 537 IGKYGNDSYRIFCV 550
>AF532602-1|AAP97338.1| 540|Homo sapiens methyl-CpG binding domain
protein 4 variant protein.
Length = 540
Score = 70.9 bits (166), Expect = 6e-12
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Frame = +2
Query: 419 SQLTIEERVPLKIQAFYNITPRLMPSSPHYIVEEEFSVNPWAMLIATIFLNKTSGKTARP 598
S+ E P + +AF TP P SP +V+E +PW +LIATIFLN+TSGK A P
Sbjct: 420 SKYNKEALSPPRRKAFKKWTP---PRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIP 476
Query: 599 HMSVFFDEYPTPYHVLSDNPSSIERFFDTLGLRK-RGHMIWKLSYQFVSSKWCRAXDLYG 775
+ F ++YP+ + + + LGL R I K S ++++ +W +L+G
Sbjct: 477 VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 536
Query: 776 IG 781
IG
Sbjct: 537 IG 538
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,422,762
Number of Sequences: 237096
Number of extensions: 2688559
Number of successful extensions: 7231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7223
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -