Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_F23
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 186 3e-48
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.090
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 29 0.63
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 29 1.1
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 28 1.5
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.6
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 5.9
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.8
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 186 bits (454), Expect = 3e-48
Identities = 91/188 (48%), Positives = 130/188 (69%)
Frame = +2
Query: 182 VLQGGYHHAALRKLQEPNTSIEPHNIMYPVFLVEKDNAIEPVHSMPNVNRYGVDQLIPLL 361
+L GY + LR+ Q I ++MYP+F+ E D+A E + SMPN R+GV++L L
Sbjct: 8 LLHAGYSNPLLREWQGVRP-ITKSSLMYPIFISEIDDAKEAIDSMPNQFRWGVNRLEEFL 66
Query: 362 AELVEKGLKSILIFGIVETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACDVCLCP 541
LV+KGL+S+++FG++E+ KD G+ ADS + PVIKA+ ++R FP+L++ACDVCLC
Sbjct: 67 GPLVKKGLRSVILFGVIES-KKDYCGSMADSENGPVIKAVKEIRHLFPELVVACDVCLCE 125
Query: 542 YTSHGHCGLLKSGGGIDHEASVKRIAEVALAYAKAGAHVVAPSDMMDNRIKAIKEELVRN 721
YT HGHCGLL G I++ SV+RIAEV+ YA AGA +++PSD MD R+KAIK++LV
Sbjct: 126 YTDHGHCGLLYEDGTINNAKSVERIAEVSGNYALAGAQIISPSDCMDGRVKAIKQKLVEL 185
Query: 722 NCKXSVXI 745
V +
Sbjct: 186 ELSHKVCV 193
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 32.3 bits (70), Expect = 0.090
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = -2
Query: 471 ITGLSTESALVPVGSL--GSVSTIPKMSIDLSPFSTSSAKRGMSWSTPYLFTFGIL*TGS 298
I+ S S V S+ S S+ S+ +S STSS S S+P + I + S
Sbjct: 564 ISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSIS-SSS 622
Query: 297 IALSFSTKNTGYIILCGSMLVFGSCNFLKAA 205
LS T +T +++ S ++ GS + L ++
Sbjct: 623 TILSSPTPSTSSLMISSSSIISGSSSILSSS 653
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.63
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 140 ETKIMSNLYLTPEHVLQGGYHHAA-LRKLQEPNTSIEPHNIMYPVFLVEKD-NAIEPVHS 313
+ +I + L H Q H AA +RKL E N++IE + P+F E D + ++ V S
Sbjct: 50 QLRIQKHAKLNYSH--QATQHVAAQIRKLYEQNSAIEDITFLNPLFYGEIDLSNLDSVKS 107
Query: 314 MPN 322
+P+
Sbjct: 108 LPH 110
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 336 PYLFTFGIL*TGSIALSFSTKNTGYIILCGSMLVFGSC 223
P F GI + + L+F+T T Y CGS ++ C
Sbjct: 136 PLTFLPGIACSADMILNFTTLMTIYFASCGSYAIYACC 173
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = -2
Query: 459 STESALVPVGSLGSVSTIPKMSIDLSPFSTSSAKRGMS----WSTPYLFTFGIL*TG--S 298
S ++ L PV S ++ PK ++ + S + G + W + F F L + +
Sbjct: 919 SQKAPLSPVESKINLMVAPKRVLNCASDSLRALLAGKTDKSFWGSRIPFLFNKLKSKQKA 978
Query: 297 IALSFSTKNTGYIILCGSMLVFGSC 223
++ SF+T+N+ I+ S L FG C
Sbjct: 979 VSSSFNTENSFLILQAVSPLTFGGC 1003
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 222 YKNRTQASNRTILCILCF 275
Y NR QASN T +C+ C+
Sbjct: 160 YSNRLQASNDTGVCVKCY 177
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 518 ACDVCLCPYTSHGHCGLLKSGGGIDHEASVKRIAEVALAYA 640
ACDV +C G CGLL G + S + + ++ + YA
Sbjct: 1105 ACDVDVC-----GQCGLLGYKGWCNSCQSTREVVKMTIPYA 1140
>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 232
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 570 SKPQCPCDVYGHKHTSHAINKSG 502
+KPQCP +H ++AIN +G
Sbjct: 85 TKPQCPKGFLQWQHGTYAINDTG 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,215
Number of Sequences: 5004
Number of extensions: 66477
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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