Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_F21
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 64 2e-11
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 61 2e-10
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 52 1e-07
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 44 3e-05
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 40 5e-04
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 29 0.65
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 29 0.65
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 29 0.86
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 29 1.1
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 27 2.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.5
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 26 8.1
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 64.5 bits (150), Expect = 2e-11
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +3
Query: 420 FSLCLVRDCRXTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEMLRE 599
F + R + TD E+ ++ AF FD++ NG I E L +LT++G+R + ++V +M+RE
Sbjct: 70 FLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIRE 129
Query: 600 API-RDGLFDYVEFTRIL 650
A DG+ +Y EF+R++
Sbjct: 130 ADTDGDGVINYEEFSRVI 147
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = +1
Query: 250 QIAEFKEAFNMIDQNRDGFIDKDDLHDMLASLXQKP 357
QIAEF+EAF++ D+++DG I ++L ++ SL Q P
Sbjct: 10 QIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSP 45
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 235 MFDQAQIAEFKEAFNMIDQNRDGFIDKDDLHDMLASLXQK 354
M D E +EAF + D++ +G+I ++L +L SL ++
Sbjct: 78 MKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGER 117
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +2
Query: 350 KNPTEDYLEGMMNEAP----GPINFTMFLTLFGERLQ 448
++PT L+ M+NE G I+FT FLT+ +++
Sbjct: 43 QSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMK 79
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 60.9 bits (141), Expect = 2e-10
Identities = 23/65 (35%), Positives = 48/65 (73%)
Frame = +3
Query: 456 DPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEMLREAPIRDGLFDYVE 635
DPE+ +K F FD++ G+IG LR +LT++G++ +++++DE+L+ P++DG+ +Y +
Sbjct: 75 DPEEFVKG-FQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNYHD 133
Query: 636 FTRIL 650
F +++
Sbjct: 134 FVQMI 138
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 262 FKEAFNMIDQNRDGFIDKDDLHDMLASLXQKP 357
+K+AF++ D++ G I K + D+L + Q P
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNP 39
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 51.6 bits (118), Expect = 1e-07
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +3
Query: 447 RXTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEMLREA-PIRDGLF 623
R T+ E+ AF FD++N+G I + + + T+G++ +D++V M++EA P G F
Sbjct: 72 RETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSF 131
Query: 624 DYVEFTR 644
DY +F +
Sbjct: 132 DYYDFVQ 138
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 250 QIAEFKEAFNMIDQNRDGFIDKDDLHDMLASL 345
Q E KEAF + D ++DG I + +L SL
Sbjct: 7 QTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSL 38
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 44.0 bits (99), Expect = 3e-05
Identities = 25/77 (32%), Positives = 44/77 (57%)
Frame = +3
Query: 444 CRXTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEMLREAPIRDGLF 623
CR + D+++ AF FD+ +G I +R+ L++MGDR +V+ +LR + G+F
Sbjct: 111 CRISPRNDLLE-AFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVESILR-SYTSHGVF 168
Query: 624 DYVEFTRILKHGAKDKD 674
Y +F + G+KD +
Sbjct: 169 YYEKFVDAIA-GSKDSN 184
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 39.9 bits (89), Expect = 5e-04
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 456 DPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEMLREAPI-RDGLFDYV 632
DP + IK AF FD++ G I LR + + + D +++ M+ E + +DG +
Sbjct: 107 DPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQ 166
Query: 633 EFTRIL 650
EF I+
Sbjct: 167 EFIAIM 172
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 29.5 bits (63), Expect = 0.65
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 294 VLINHIESLLELCYLSLIKHSKHIGGCTL--CALLVNATTGCL 172
+LIN ++S + LC+L H + + T+ C +V ++ C+
Sbjct: 1119 ILINFLDSFIRLCHLPAKTHDERVTAVTVIRCTQIVALSSSCV 1161
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 29.5 bits (63), Expect = 0.65
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 429 CLVRDCRXTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEM 590
CL+ TD D++KN F F+ +N + L +L + DD + +
Sbjct: 818 CLIIYSNDTDESDIVKNTFVSFNTTSNSLGNTTALSQLKGHINSVIVDDSYNNI 871
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 29.1 bits (62), Expect = 0.86
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 602 CFPEHFIHIIVCEAIAHCGKQL-AESLLTDYTIVLFIETPKCIF 474
CF F H I C A+ K + + +T YT++ + +P I+
Sbjct: 137 CFASIFFHAIACYALYLLTKSIFSNQKMTAYTVIFYCFSPSGIY 180
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 190 INKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFID 312
+NK Q+ F D + AE+ FN+ D +++G+ID
Sbjct: 43 LNKSEFQKIYKQFFPFGDPSAFAEY--VFNVFDADKNGYID 81
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 259 EFKEAFNMIDQNRDGFIDKDDLHDMLASLXQ 351
E +EAF++ D G+ID +DL A L +
Sbjct: 13 EAEEAFDLFDVTHKGYIDFEDLRRSCAQLGE 43
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 505 FSSSKHPNAFLMTSSGSVXLQSLTKQSEKHRKVNWSRCF 389
F + N FL + +G++ +SLT +S++ KVN F
Sbjct: 758 FQLKSNTNKFLGSLAGNLPQESLTTKSKRKSKVNLELMF 796
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 402 QLTLRCFSLCLVRDCRXTDPEDVIKNAFGCFDEENNGVIGEERLREL 542
Q+ L F + TD V+K CFD N G +E++ L
Sbjct: 410 QVALALFKVNAQGILNATDDSSVMKVFRQCFDHINQGTAADEKMAAL 456
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,972
Number of Sequences: 5004
Number of extensions: 62835
Number of successful extensions: 158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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