Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F18
         (938 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...   105   2e-21
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    69   1e-10
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    67   5e-10
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    49   1e-04
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    48   3e-04
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    42   0.023
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    41   0.052
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    36   1.5  
UniRef50_UPI0000E1FBFE Cluster: PREDICTED: hypothetical protein;...    35   3.4  
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    33   7.9  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score =  105 bits (252), Expect = 2e-21
 Identities = 55/79 (69%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
 Frame = +3

Query: 603 TSITKIDAQVRGGETRQDYKNTRRFPLEAPRCALLFRPCRLPEYLSAFLPSGSVALLIAH 782
           TSITKIDAQVRGGETRQDYK+TRRFPLEAP CALLFRPCRLP+    F    +   LIAH
Sbjct: 24  TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAH 83

Query: 783 AVGISVGV-GRRSSWLVPT 836
           AVGISV       SW V T
Sbjct: 84  AVGISVRCRSFAPSWAVCT 102


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 69.3 bits (162), Expect = 1e-10
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +3

Query: 603 TSITKIDAQVRGGETRQDYKNTRRFPLEAPRCALLFRP 716
           TSITK DAQ+ GGETRQDYK+TRRFPL AP CALLF P
Sbjct: 60  TSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 67.3 bits (157), Expect = 5e-10
 Identities = 31/42 (73%), Positives = 33/42 (78%)
 Frame = +3

Query: 603 TSITKIDAQVRGGETRQDYKNTRRFPLEAPRCALLFRPCRLP 728
           TSI K DAQ+ GGETRQDYK+ RRFPL AP CALLF P  LP
Sbjct: 92  TSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133



 Score = 56.0 bits (129), Expect = 1e-06
 Identities = 36/80 (45%), Positives = 43/80 (53%)
 Frame = +2

Query: 380 VCXLGALPLPRSLTRCXRSFGCGXRYQLTQRR*YGYPXNQGITQEXTXEQKASKRPGTVK 559
           +C  G +PLPRSLTR  RSFGCG RY+LT           G   E T +  + +      
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDTRKTLSKEE----I 77

Query: 560 RPRCWRFSIGSAPLNEHHKN 619
           RPR  RFSIGSAPL    K+
Sbjct: 78  RPRRSRFSIGSAPLTSIAKS 97


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 344 CINESANXRGXAVCXLGALPLPRSLTRCXRSFGCGXRYQL-TQRR*YGYPXNQGITQ 511
           CI + A  R  AV  L ALPL RS TRC RS GCG      +  R YG P  QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 48.4 bits (110), Expect = 3e-04
 Identities = 22/32 (68%), Positives = 22/32 (68%)
 Frame = -2

Query: 544 PFAGLLLXCXFLXYPLIXWITVLPPLSELIPL 449
           P    LL C F  YPLI WITVLPPLSEL PL
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPL 50


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 41.9 bits (94), Expect = 0.023
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = +1

Query: 451 AVSAHSKAVIRLSTXSGDNXGXN 519
           AVSAHSKAVIRLST SGDN G N
Sbjct: 36  AVSAHSKAVIRLSTESGDNAGKN 58


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 40.7 bits (91), Expect = 0.052
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +3

Query: 567 VAGVFXXXXXXXTSITKIDAQVRGGETRQDYKNTRRFPLEAPRCALLFRP 716
           ++ +F       T+ITKI  Q +  +T+ +YK T  FPL++P  +LLF P
Sbjct: 65  LSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 342 SALMNRPTXGXRRFAYW 392
           +ALMNRPT G RRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_UPI0000E1FBFE Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 229

 Score = 34.7 bits (76), Expect = 3.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 598 PERASQKSTLKSEVAKPDRTIKIPGVSPWKPLXALSCSDPAAYRNTCPPFS 750
           PERA++ S L+ + A P R  +    SPW+PL          +R   PP+S
Sbjct: 103 PERAARVSVLQPKAAPPSRGRRPSVSSPWRPLLGHPGHGQGLHRAPGPPWS 153


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 33.5 bits (73), Expect = 7.9
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = -3

Query: 414 ERGSGRAPNXQTAXPRXLADSLMQ 343
           +R +  APN QTA PR LADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,150,009
Number of Sequences: 1657284
Number of extensions: 9834164
Number of successful extensions: 23020
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23009
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86141029997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)