Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F18
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...    27   3.8  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   8.8  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   8.8  

>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +1

Query: 649 DRTIKIPGVSPW------KPLXALSCSDPAAYRNTCPPFSLREAWRFS*LTL 786
           DR I     SPW      KP+       PA Y+N  PP ++ + ++FS  TL
Sbjct: 38  DRLISTNLFSPWAELNTKKPVSQPMFKLPACYKNVNPPPAISKIFQFSDETL 89


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 678 PLEAPRCALLFRPCRLPEYLSAFLPSGSVA 767
           P+     A    P   P+ L++FLPSGSV+
Sbjct: 186 PVSRAIAASEISPSSSPQLLTSFLPSGSVS 215


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 512 EXTXEQKASKRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQRWRNPT 652
           E T  +  S   G+   PR  RF++G+   + +  N   +Q + N T
Sbjct: 518 EHTGNRVVSFPRGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANAT 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,455
Number of Sequences: 5004
Number of extensions: 36066
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)