Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F16
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.16 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.50 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 512 PPPPGXXGXXXXXPPPPP 565
           PPPPG  G     PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 512 PPPPGXXGXXXXXPPPPP 565
           PPPP   G     PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +1

Query: 229 PPXPPPPKKXXPXXXXPPPWGGXXAPXKKKKXXXXG 336
           PP PPPP    P    PPP  G     K K     G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 229 PPXPPPPKKXXPXXXXPPP 285
           PP PPPP    P    PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 512 PPPPGXXGXXXXXPPPPP 565
           PPPPG        PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -3

Query: 547 PXXXXPXPXGGGXFXXKKXTPPPPPXXXKKK 455
           P    P P   G     +  PPPPP   KK+
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 230  PXXPPPPKKXXPXXXXPPLGGGXXPP 307
            P  PPPP    P    PP+  G  PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAG--PP 1728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,614
Number of Sequences: 5004
Number of extensions: 20477
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)