Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_F10
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 32 0.091
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 30 0.48
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 29 0.84
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 26 6.0
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 26 7.9
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz... 26 7.9
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 7.9
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 7.9
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 7.9
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 32.3 bits (70), Expect = 0.091
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 12/130 (9%)
Frame = +2
Query: 200 ENKVDELPDLDNLLQCPVCYE-IPTGHIFQCNEGHNVCGRC----KVRLSVCPVCRALFF 364
+ K+ L LD+ L+C +C+E I C+ H C C +CP CRA
Sbjct: 14 QTKIPSLKGLDSSLRCLICHEYFRAPLITSCS--HTFCSFCIRDYLREHPMCPACRAPEQ 71
Query: 365 GTR---NYAMEELIANVRKLR----AFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGE 523
+R N +EE++ + + +R F V + +L + + A+DS S + E+ +
Sbjct: 72 ESRLRKNTILEEILESFKVIRPTLFEFLKVENVPKPVLQA-PETVIAQDSASGDEEWEDD 130
Query: 524 DENNDNQNSV 553
+N + S+
Sbjct: 131 LASNSSPASI 140
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 29.9 bits (64), Expect = 0.48
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 431 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAP 562
G TRGL S SST +R S + + ED+ + Q++VV P
Sbjct: 24 GSSFTRGLKNSTLSSTSSRKSSDEKSRKSSEDKRSP-QSTVVQP 66
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 29.1 bits (62), Expect = 0.84
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 206 KVDELPDLDNLL-QCPVCYEIPTGHIFQCNEGHNVCGRC 319
K+D L + L+ +CP+C P + N H CG C
Sbjct: 863 KIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDC 901
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 802 SEIFQWLRKICPCLNFDCSY*FP 734
S+I W++ CP L+ D Y FP
Sbjct: 358 SDIDAWIQVACPRLSIDWGYAFP 380
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 356 LFFGTRNYAMEELIANVRKLRAFKLGGKVTRGLLAS 463
LF GTRN + ++A ++ R + + + GLL +
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTN 147
>SPBC18H10.15 |ppk23||serine/threonine protein kinase
Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +2
Query: 653 YFHSPELLEGRAEGGEYLQAWQISTTLGKLVT 748
++ +PELL G G+ + W I +++T
Sbjct: 238 WYRAPELLLGAPSYGKEIDMWSIGCIFAEMIT 269
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 853 FATPSDAAIVNQAYKILSEIFQWLRKICPCL-NFDCSY*FPK 731
F D + +NQA+ + ++F+ +RK P L D Y PK
Sbjct: 1890 FEQTGDISDLNQAWDLYYQVFKKIRKQLPQLTTLDLQYVSPK 1931
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/60 (20%), Positives = 32/60 (53%)
Frame = +2
Query: 383 MEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAP 562
++E I +++++ ++ G R + + S+ A+ DN LGE++++ + + + P
Sbjct: 254 IDEAIDRLKEVKRRRIEGFERRKMRREQNLSSDAKVEDQDNDSMLGENKSSVSTETALKP 313
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 739 ISNCNQNSNMGIFFLTIEIFQIIFCML 819
+S+ + SN+ +FF+ + FQ++ C+L
Sbjct: 361 LSSHKETSNLIVFFVELYNFQLVSCVL 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,532,629
Number of Sequences: 5004
Number of extensions: 74183
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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