Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F09
         (876 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    30   0.021
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   3.1  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   3.1  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.5  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 30.3 bits (65), Expect = 0.021
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 720 YNCECQSGYVGPRCE 764
           + C+C  G+VGPRCE
Sbjct: 282 FECKCPPGFVGPRCE 296



 Score = 29.1 bits (62), Expect = 0.048
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 717 DYNCECQSGYVGPRCEFK 770
           DY+C C+ G++G  CE K
Sbjct: 321 DYHCNCKLGFMGRHCESK 338



 Score = 26.6 bits (56), Expect = 0.26
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +3

Query: 699 CDIGEPDYNCECQSGYVGPRCEFKDLD 779
           C      + C C  G+ G  CEF   D
Sbjct: 353 CTTIHAGHKCTCPEGFYGKNCEFSGYD 379



 Score = 25.0 bits (52), Expect = 0.78
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 720 YNCECQSGYVGPRCE 764
           Y+C+C  G+ G  CE
Sbjct: 206 YSCKCPKGFQGQNCE 220



 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 702 DIGEPDYNCECQSGYVGPRCE 764
           DIG   + C C  GY G  C+
Sbjct: 163 DIGN-SHRCHCSDGYSGSYCQ 182



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
 Frame = +3

Query: 699 CDIGEPDYNCECQSGYVGPRC-EFKD 773
           C      Y C C  GY G  C E+ D
Sbjct: 76  CQDHTTHYTCHCPYGYTGKDCGEYVD 101



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 720 YNCECQSGYVGPRCEFKDLD 779
           Y C+C SG  G  CE   ++
Sbjct: 399 YICDCPSGTNGTNCEIDTIN 418



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 717 DYNCECQSGYVGPRCEFKD 773
           DY C C   + G  CE  D
Sbjct: 438 DYACYCPPKHTGKNCEIYD 456



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 720 YNCECQSGYVGPRCE 764
           ++C C SG +G  CE
Sbjct: 244 FSCSCPSGTLGYICE 258



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 670 CLNGGVCFTV 699
           C NGGVC T+
Sbjct: 347 CQNGGVCTTI 356


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 738 SGYVGPRCEFKDLDNSYVLSGRQLMMETASI 830
           SGY+ P+C   D    ++ +  Q  +  A I
Sbjct: 252 SGYIKPKCVLSDHGTQFISNTWQNSLRAADI 282


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 291 RCKKVNTGNMSGRIVNADASKGFLFEIRMRSC 386
           RC K +  N + R+ +     G  F+I  ++C
Sbjct: 56  RCDKNSDNNGATRLASVRCPVGLAFDIERQTC 87


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 174 NLQSLKVCLTFHFRHARRGIDAISLAPVETAP 269
           +L ++++C        RRG   + L PV + P
Sbjct: 200 DLNAVRLCFQVFLEGERRGKFTVPLTPVVSEP 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,655
Number of Sequences: 336
Number of extensions: 3704
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)