Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F09
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    32   0.12 
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    29   0.66 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   3.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   6.1  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 319 MFPVFTFLHRRSLAHDGGAVSTGARDIASIPRRACR 212
           ++  F FLH R +A + G  S  +R++A+I  +  R
Sbjct: 661 IYRAFVFLHNRDIAENNGVFSARSRNVATIAAKGAR 696


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 113 FVYNFSNGTLSVCVLNDRHTQFTKFEGVFDF 205
           F+ N   G L+V   N +  +FT F+G FDF
Sbjct: 2   FLQNLFLGFLAVVCANAQFAEFTAFDGKFDF 32


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 132 FEKLYTKWSCERIESTLHSL 73
           F+K +T   CERIESTLH L
Sbjct: 510 FKKKFTT-ICERIESTLHEL 528


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 50  LSRCIXQLNECSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFTKFEGVFDFSLS 214
           LS+ +  L + S++S +  L  V+N  N    +  + D   +   F  V DF LS
Sbjct: 198 LSKHLFLLGDFSLISYVKVLCGVFNIPNYNAFILSVEDLLPENISFAAVADFQLS 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,595
Number of Sequences: 5004
Number of extensions: 58444
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)