Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F08
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    34   0.031
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   1.2  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   2.7  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   8.3  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   8.3  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 24/90 (26%), Positives = 46/90 (51%)
 Frame = +3

Query: 342  VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 521
            ++ K +  ++ +G+  S   V+  +E + V T  + + Y  LTD S+E      ENK  L
Sbjct: 3443 LRNKCEPIISSFGFPISKSAVRTNIE-RCVQTSIESKYYKNLTDYSLENIYIIQENKSPL 3501

Query: 522  LVINKLLEPINVADSHWKQKTDKVVIFLXK 611
            L+I+   + +++  S +K K   ++ F  K
Sbjct: 3502 LIIDPSSQILDILPSLYKGKASDLISFSNK 3531


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 622 NTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQ 720
           NT W  M  +E++ +  R + LKP   D+K+ +
Sbjct: 350 NTIWREMMAMERRTQAARLSGLKPVAADEKESE 382


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 510 KDYLLVINKLLEPINVADSHWKQ 578
           ++YLL+   +  P +V +SHWK+
Sbjct: 530 QEYLLIDRDVFGPFSVRESHWKK 552


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 224 GFTLLGDQKT*DRTNNIKRKGNFDANGSITNTHNKYISSSAKEVSSQIEC 373
           GF  +GD+   D  NNI       +N    + H+K   S  K +  +I+C
Sbjct: 112 GFLTVGDEFYKDGVNNISSLLTSSSNQRFNDNHHK---SIVKRIRHEIKC 158


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +3

Query: 342  VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 521
            +QK Y+       WD+SDK V  ++E  N   L K     K T  S  L    L   D  
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVVCWIEEHN-DDLSKRTQELKSTYYSERL--SKLLRSDRK 2251

Query: 522  LVINKLLEPINVADSHWKQK 581
             +I+ L + +   D + K++
Sbjct: 2252 GMIDSLAQVLTELDENEKKE 2271


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 588 YLFFVSNDCLPHL 550
           ++FFV ND LPHL
Sbjct: 329 FIFFVGNDFLPHL 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,668
Number of Sequences: 5004
Number of extensions: 54527
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)