Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F08
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0764 - 31804811-31804915,31805013-31805072,31805720-318059...    37   0.019
08_02_0318 + 15710834-15711775                                         30   2.2  
07_03_0674 + 20598668-20598774,20599456-20600467                       30   2.2  
08_02_0822 + 21549257-21550729,21550776-21550877                       29   5.0  
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600...    28   8.7  

>01_06_0764 -
           31804811-31804915,31805013-31805072,31805720-31805959,
           31807367-31807525,31807653-31807769
          Length = 226

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
 Frame = +3

Query: 165 RSDIEXFNDLLKQAKRKKVQDLLSLEIRXXXXXXXXXXXXXXXXPMEV-SPIPTTSTSAP 341
           R D+E    L   AKR +V   L+ EIR                 +   SP    + +AP
Sbjct: 7   RLDLEELRRLEGLAKRPRVLSALANEIRAVDAKLAKATEPQAPQAVAAGSPPVVAAAAAP 66

Query: 342 VQKK----YQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLEN 509
                     V L  + WDQ  + +K++V L+ V    +++V       S++    +++ 
Sbjct: 67  APAAAAGVSYVTLGSFSWDQDAEKIKIYVFLEGVE---QDKVETTFKPMSVDTKFHDVKG 123

Query: 510 KDYLLVINKLLEPINVADSHWKQKTDKVVIFLXKI*SKHN 629
           K+Y   I KL + I         K  K+++ L K  SK N
Sbjct: 124 KNYRCAIPKLHKEIVPEKCKVLVKPTKIIVTLYKA-SKGN 162


>08_02_0318 + 15710834-15711775
          Length = 313

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -3

Query: 330 YLLWVLVILPLASKFPFLLMLLVLSQVF*SPRRVNPVLSYV 208
           Y L  LV++PL    P  ++ L LS V+ +PRR +PV +++
Sbjct: 228 YALAALVVVPL----PVQVVALALSSVWETPRRTSPVAAFL 264


>07_03_0674 + 20598668-20598774,20599456-20600467
          Length = 372

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 297 PMEVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFV-ELKNVHTLPKEQVYCKLTD 473
           P +VSP P      P++K  + K ++Y       FVK  + ++ N H    E ++ +L+ 
Sbjct: 220 PPQVSPTPAIDVLLPIEKAQKAKRDIYA---VSYFVKAGLGKVLNPHKERMENLFKRLSP 276

Query: 474 KSMELHV 494
            + EL+V
Sbjct: 277 WAPELYV 283


>08_02_0822 + 21549257-21550729,21550776-21550877
          Length = 524

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/41 (24%), Positives = 28/41 (68%)
 Frame = +3

Query: 468 TDKSMELHVDNLENKDYLLVINKLLEPINVADSHWKQKTDK 590
           ++K +E++ D  +NK+ ++++ ++ E +N+ +SH +  T +
Sbjct: 438 SEKMVEMN-DTRKNKEQIIMLKEVYEQLNMIESHMRPSTSQ 477


>06_03_0478 -
           21259376-21259465,21259862-21259924,21260025-21260066,
           21260180-21260461,21261084-21261587,21261973-21261981,
           21262122-21262196,21262375-21262449,21262557-21263494,
           21263577-21263607,21263694-21263979,21264691-21264905,
           21265329-21265437,21265556-21265611,21265730-21265822,
           21266348-21266393,21266496-21267221,21267489-21267550,
           21267738-21268013,21268604-21268735,21268835-21268909
          Length = 1394

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 646 EIEKKFEDQRNNRLKPAETDKKDPQDS 726
           E+E++ E  R  R+K  E D+K P DS
Sbjct: 361 ELERERERLRERRMKERERDRKHPADS 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,340,511
Number of Sequences: 37544
Number of extensions: 293226
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)