Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F08
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical p...    35   0.068
Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical ...    29   3.4  
U41037-1|AAA82387.1|  629|Caenorhabditis elegans Gtpase activati...    28   7.8  
AF118123-1|AAD13781.1|  629|Caenorhabditis elegans GTPase activa...    28   7.8  

>Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical
           protein ZK1098.3 protein.
          Length = 784

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +3

Query: 321 TTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCK---LTDKSMELH 491
           T+S   P  K+  +K  +   D   K  K  V+ K+  ++ +EQ+Y K     D+ ++  
Sbjct: 5   TSSEDVPENKQKSLKFEII--DARMKIFKDIVKSKSSESVKEEQIYQKSLEFFDEDLKSS 62

Query: 492 VDNLENKDYLLVINKLLEPINVAD 563
            +++ N++      K LEP+NV D
Sbjct: 63  EESVSNEEIKTGSEKELEPLNVFD 86


>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +3

Query: 303 EVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSM 482
           ++  +P       V K    +L  YGWDQ  +    FV      TL  +  YC L D   
Sbjct: 21  DLPQLPDEIIEIIVSKVLPTELVAYGWDQVSRSFGTFVH----RTLCSKVYYCALHDPVW 76

Query: 483 ELH 491
           EL+
Sbjct: 77  ELY 79


>AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical
           protein Y39H10A.6 protein.
          Length = 684

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 215 ESTGFTLLGDQKT*DRTNNIKRKGNFDANGSITNTHNKYIS-SSAKEVSSQIECIWL 382
           E TGFT+        R N +K  GN+DA   I  T N +I+  +AK  S  ++C  L
Sbjct: 79  EETGFTIETTSGARVRANILK--GNYDAAIQILETSNDHITEETAKHGSYIVKCFKL 133


>U41037-1|AAA82387.1|  629|Caenorhabditis elegans Gtpase activating
           protein familyprotein 1 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 357 QVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYC--KLTDKSMELHVDNLENKDYLLVI 530
           QV  +   W +   + K +V+L N H + ++ V C  K T    ++   N++NK+ + ++
Sbjct: 420 QVDRSRLAWKKVLHYKKRYVQLTNTHLIWQKDVQCAPKGTVPLSDIKFVNVDNKNIITIV 479

Query: 531 NKLLE 545
            + ++
Sbjct: 480 CETMQ 484


>AF118123-1|AAD13781.1|  629|Caenorhabditis elegans GTPase
           activating protein GAP-1 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 357 QVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYC--KLTDKSMELHVDNLENKDYLLVI 530
           QV  +   W +   + K +V+L N H + ++ V C  K T    ++   N++NK+ + ++
Sbjct: 420 QVDRSRLAWKKVLHYKKRYVQLTNTHLIWQKDVQCAPKGTVPLSDIKFVNVDNKNIITIV 479

Query: 531 NKLLE 545
            + ++
Sbjct: 480 CETMQ 484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,686
Number of Sequences: 27780
Number of extensions: 297327
Number of successful extensions: 952
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)