Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F07
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    28   2.2  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    27   3.8  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   6.7  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   6.7  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   8.9  

>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 592 DISVPPLDLWLVLGSVWSSHPGLWEQSP 675
           D+ +P ++  +  G+ W  HPG W + P
Sbjct: 369 DLKIPGVNCPIPTGAQWGFHPGGWGKPP 396


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 547 PMPVMVTEALAFASGDISVPPL----DLWLVLGSVWSSHPGLW 663
           PM  ++   L  AS   S+PPL     L L++G+VW  + G W
Sbjct: 43  PMSFLIALVLIAAS---SIPPLLGQDPLALLIGAVWGLNVGFW 82


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 346 YRYGFQYYRSDEKSVLAPGKTVHFRVEGLAAYL 444
           Y  G Q +  DE+S   PG     RVEG  A+L
Sbjct: 6   YYKGLQCWIPDEQSQWIPGSIKDCRVEGEKAFL 38


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 258 DLHHHRIRDLK*KTKRLNLPVNFLVFQF 175
           +L+    RDL  KTKRL  P N L+ QF
Sbjct: 119 ELNFVAARDLLIKTKRLPKPFNNLLIQF 146


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 694 SSISIXXEIAPKAQDATTRHYPTPATG 614
           SS+++  E + K +    RH PTP TG
Sbjct: 614 SSLNVSLESSKKPEIFHERHIPTPETG 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,297
Number of Sequences: 5004
Number of extensions: 49845
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)