Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F07
         (945 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.76 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   2.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   9.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   9.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   9.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   9.3  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 8/13 (61%), Positives = 10/13 (76%), Gaps = 2/13 (15%)
 Frame = -1

Query: 573 SLCD--HHWHRCP 541
           +LC+  HHWH CP
Sbjct: 465 ALCNTLHHWHHCP 477


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 656 PGCDDQTLPNTSHRSR 609
           PGCD+QT    + RSR
Sbjct: 12  PGCDEQTSRGDNDRSR 27


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 637 HYPTPATGREAAL 599
           H+P   TGRE AL
Sbjct: 200 HFPATPTGREVAL 212


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 634 YPTPATGREAALRCL 590
           YP   +G E ALRCL
Sbjct: 230 YPDIYSGYEGALRCL 244


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 634 YPTPATGREAALRCL 590
           YP   +G E ALRCL
Sbjct: 230 YPDIYSGYEGALRCL 244


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 211 SFCLLFQVPDPVVVQIKELLI 273
           S C+LF +  P  V IKEL++
Sbjct: 219 SNCVLFALQTPDNVLIKELVV 239


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 634 YPTPATGREAALRCL 590
           YP   +G E ALRCL
Sbjct: 230 YPDIYSGYEGALRCL 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,565
Number of Sequences: 438
Number of extensions: 4348
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)